Plant FIBer expression Database

Lus10031539 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G32590 543 / 0 EMB2795 EMBRYO DEFECTIVE 2795, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030028
[exp]
684 / 0 AT2G32590 721 / 0.0 EMBRYO DEFECTIVE 2795, unknown protein
Lus10035296
[exp]
536 / 0 AT2G32590 706 / 0.0 EMBRYO DEFECTIVE 2795, unknown protein
Lus10015139
[exp]
67 / 2e-07 AT2G32590 48 / 5e-07 EMBRYO DEFECTIVE 2795, unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G155900
[exp]
602 / 0 AT2G32590 670 / 0.0 EMBRYO DEFECTIVE 2795, unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05786 Cnd2 Condensin complex subunit 2
Representative CDS sequence
>Lus10031539 pacid=23155914 polypeptide=Lus10031539 locus=Lus10031539.g ID=Lus10031539.BGIv1.0 annot-version=v1.0
ATGGGGGAGGAGATCTCGAGCCCGAATCCGGTGCAGAAGCAGCAGAGGCTCCCAAGAATTCAGTCACCAGCGGGACCTCTCTTCCTCGGCTCGAACAACG
ACCAGCTCGAGCGAGCCCAGGCTCGAGCCGCACGAGCCGCCGCCATCCGCCGCAAGCACGCCGCGGCGGCTAATGCTCCACTCCCGCCGCTTTCGTCGTC
TGCCGACGCAGACTCCTCACACCCTTGCTACCTCACCAAGCAGCAGATCCTCGACATCTTCAACAACTGCATCAAACTCGCCAGTGAAAATGTCTGGTTT
GCCCTTCCCTCACTTTTCTCTTTGGGTGTGTTCTGGGATTATTCGTTTGAATTGAATTTCGTTGTGCTGCAGAAAATCAATCAGAAGAATACGTGGGATT
TGGACTTGATAGATCACTTATACGACATTTTTAAGGTTGAGGGCGAAGAGGATTCAGAGACCAATTTTCAGAAGGCGAGTTGTACCCTGGAAGCTGGAGT
GAAGATATACTCATTACGAGTAGATTCAGTGCACGCCGAGGCATACAAGGTCCTTAGTGGGCTTCATCGAGTAGGTCTAGATGACGAACCAGATGCTTCT
TCTGCGGATGCCAATGGTAATGCTGGAAAAGAGGACGGTAAAAGGAAAGAGGAGAAGGAGAAAAAGGTATCTCCTTTGTCAACACTTGAACCGTCGTTTG
AGGTTCTTAACGTGAAGAAGCTAGATGTTGCTTTTTCCGTTGATCCACTCTATCATCAGACATCTGCACAATTTGACGAAGGGGGAGCTAAGGGTCTCTT
GCTGAACAACCTTGGAGTATATGGTGGATGTCGAGTGCTCTTTGATTCAGAAGAAATACCAGGAAAATTTGTGTCATGTGGAAACCAGTGTGGCAAGGAT
GACACAATTGACCTCTCCTTTGCTAGAGATTGCATCGAACAAATGTTACTTCATATTGAAACGACAAATGAAATTTCACCAACTCTTAGTGAAATCATTC
GCCGATTTGATGAACATAACCAAAGGCCAGTCGATACATTCTCTTCCAACCCGAGAACAGGCGAGCAAGGGGAGGCAGATATCGGTTTTAACCACGAAGA
CAGAGCTGATTTTGATGGTGATGCATTTGAGAATCAAGAGAGTTGGGCTTATGATCACGATGATAACCACAGTTTCGTCGATGATGACATAGATAATGGA
GATGCAACTGTTCCTAGTTATCATCAGGACAATGGATTTGACACCCTCGATATGGATGACAGGTCAGGAACAATTGATACATACTTGTTGCACAGTTTGG
GTTTCCAATCGAAACATAATGCTTGGGCGGGTCCTGATCACTGGAAGTACCAAAAAGCCAAAGCTTCAGAGGATGATCCCAATGGAGAAGAATGGCCACA
GGTAGCAACCAAGAAGCAAAGAGAACCTGATATTGATTTCACAAAAGCATTGGATGAAGAATTGCTGGATGTCTATGCTCCCCCAAAGAAACCCAAGTCA
CTTCTGCTACCAGCAAAGAGAATACCCGGCAACACAAGGTTGCCAGAGGATTGCCACTACCAACCAGAGGATCTTGTTAAATTGTTTCTTCTCCCCAATG
TCATGTGTATTCGGAAGAGAGGAAGAAGGTCCAGAGAAGAACCTGGGCGGAGATTTGATGATAATGAAGCACAACCATCACAGGACGATGATGATGACAA
TGCAGACTTTGGTGGGCAGTTTGACGATATGGATGCACAGAGTGACATTGAGGACCCAGATACACTAGTTTCTCAGCCTCGGCAGGTTACTAAAATTGAA
GTAAACTATGATAAAAGCTGCAAGCAAGTTGACGTTCAACGGCTGAAGGAAACCCTTTGGCACTATATACAAGAATCGCCTCAAACAACTATACAGAACC
AAGAAGAGGAAGTGTCATTCAAGGGCCTATTAGCAAGCTTTCCAAAGGACTGCAATGCTGCTGCAAGCATCAATGACATCTCCCCTCATCTGTGTTTTAT
CTGCTTGTTACATTTGGCCAACGAGCACGGTCTGAGCATCCACAGCCAACCCTCCTTAGATGATCTCACCATCCATCATCCTCAAAGCTCACCTAGGTAA
AA sequence
>Lus10031539 pacid=23155914 polypeptide=Lus10031539 locus=Lus10031539.g ID=Lus10031539.BGIv1.0 annot-version=v1.0
MGEEISSPNPVQKQQRLPRIQSPAGPLFLGSNNDQLERAQARAARAAAIRRKHAAAANAPLPPLSSSADADSSHPCYLTKQQILDIFNNCIKLASENVWF
ALPSLFSLGVFWDYSFELNFVVLQKINQKNTWDLDLIDHLYDIFKVEGEEDSETNFQKASCTLEAGVKIYSLRVDSVHAEAYKVLSGLHRVGLDDEPDAS
SADANGNAGKEDGKRKEEKEKKVSPLSTLEPSFEVLNVKKLDVAFSVDPLYHQTSAQFDEGGAKGLLLNNLGVYGGCRVLFDSEEIPGKFVSCGNQCGKD
DTIDLSFARDCIEQMLLHIETTNEISPTLSEIIRRFDEHNQRPVDTFSSNPRTGEQGEADIGFNHEDRADFDGDAFENQESWAYDHDDNHSFVDDDIDNG
DATVPSYHQDNGFDTLDMDDRSGTIDTYLLHSLGFQSKHNAWAGPDHWKYQKAKASEDDPNGEEWPQVATKKQREPDIDFTKALDEELLDVYAPPKKPKS
LLLPAKRIPGNTRLPEDCHYQPEDLVKLFLLPNVMCIRKRGRRSREEPGRRFDDNEAQPSQDDDDDNADFGGQFDDMDAQSDIEDPDTLVSQPRQVTKIE
VNYDKSCKQVDVQRLKETLWHYIQESPQTTIQNQEEEVSFKGLLASFPKDCNAAASINDISPHLCFICLLHLANEHGLSIHSQPSLDDLTIHHPQSSPR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G32590 EMB2795 EMBRYO DEFECTIVE 2795, unknown... Lus10031539
[exp]
0 1
AT5G25590 Protein of unknown function (D... Lus10022116
[exp]
1.4 0.9641
AT4G36180 Leucine-rich receptor-like pro... Lus10042177
[exp]
3.9 0.9530
AT5G37630 EMB2656 EMBRYO DEFECTIVE 2656, ARM rep... Lus10020813
[exp]
6.2 0.9538
AT5G63950 CHR24 chromatin remodeling 24 (.1) Lus10015690
[exp]
7.5 0.9259
AT3G06868 unknown protein Lus10024784
[exp]
9.5 0.9346
AT5G25380 CYCA2;1 cyclin a2;1 (.1) Lus10013140
[exp]
10.6 0.9405
AT5G19340 unknown protein Lus10041215
[exp]
12.7 0.9297
AT2G40070 unknown protein Lus10027767
[exp]
15.0 0.8813
AT4G18570 Tetratricopeptide repeat (TPR)... Lus10000986
[exp]
15.0 0.9300
AT1G06660 JASON JASON, unknown protein Lus10020732
[exp]
15.1 0.9305

Lus10031539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.