Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15440 466 / 6e-163 CYP74B2, HPL1 hydroperoxide lyase 1 (.1) AT5G42650 353 / 2e-116 CYP74A, AOS, DDE2 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) AT4G15393 64 / 1e-10 CYP702A5 "cytochrome P450, family 702, subfamily A, polypeptide 5", cytochrome P450, family 702, subfamily A, polypeptide 5 (.1.2.3) AT2G42850 61 / 9e-10 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) AT4G15396 60 / 3e-09 CYP702A6 "cytochrome P450, family 702, subfamily A, polypeptide 6", cytochrome P450, family 702, subfamily A, polypeptide 6 (.1) AT3G20120 58 / 9e-09 CYP705A21 "cytochrome P450, family 705, subfamily A, polypeptide 21", cytochrome P450, family 705, subfamily A, polypeptide 21 (.1.2) AT5G06905 56 / 6e-08 CYP712A2 "cytochrome P450, family 712, subfamily A, polypeptide 2", cytochrome P450, family 712, subfamily A, polypeptide 2 (.1) AT4G15330 55 / 7e-08 CYP705A1 "cytochrome P450, family 705, subfamily A, polypeptide 1", cytochrome P450, family 705, subfamily A, polypeptide 1 (.1) AT3G20110 55 / 9e-08 CYP705A20 "cytochrome P450, family 705, subfamily A, polypeptide 20", cytochrome P450, family 705, subfamily A, polypeptide 20 (.1) AT5G09970 55 / 9e-08 CYP78A7 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015138 [exp] 741 / 0 AT4G15440 378 / 2e-128 hydroperoxide lyase 1 (.1) Lus10030029 [exp] 708 / 0 AT4G15440 481 / 3e-169 hydroperoxide lyase 1 (.1) Lus10035289 [exp] 650 / 0 AT4G15440 443 / 2e-154 hydroperoxide lyase 1 (.1) Lus10030033 [exp] 648 / 0 AT4G15440 442 / 7e-154 hydroperoxide lyase 1 (.1) Lus10030032 [exp] 625 / 0 AT4G15440 423 / 2e-146 hydroperoxide lyase 1 (.1) Lus10018791 [exp] 353 / 8e-117 AT5G42650 615 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10035295 [exp] 328 / 2e-110 AT4G15440 253 / 4e-83 hydroperoxide lyase 1 (.1) Lus10021019 [exp] 306 / 8e-99 AT5G42650 474 / 6e-164 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10021015 [exp] 304 / 9e-98 AT5G42650 468 / 7e-162 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G155800 [exp] 632 / 0 AT4G15440 507 / 6e-179 hydroperoxide lyase 1 (.1) Potri.002G130700 [exp] 353 / 2e-116 AT5G42650 693 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G038700 [exp] 332 / 3e-108 AT5G42650 658 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.009G109700 [exp] 330 / 3e-108 AT5G42650 479 / 2e-166 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148900 [exp] 328 / 1e-107 AT5G42650 499 / 2e-174 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G149000 [exp] 319 / 9e-104 AT5G42650 492 / 3e-171 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148600 [exp] 291 / 1e-93 AT5G42650 442 / 3e-152 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.019G078600 [exp] 67 / 1e-11 AT5G36110 476 / 2e-165 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.002G069600 [exp] 66 / 3e-11 AT5G45340 296 / 1e-95 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Potri.011G155600 [exp] 65 / 6e-11 AT5G36110 388 / 4e-131 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10031540 pacid=23155874 polypeptide=Lus10031540 locus=Lus10031540.g ID=Lus10031540.BGIv1.0 annot-version=v1.0 ATGCCGGCGATACCCATGACAACAAGAATAATGGCCTCCTCCTCCTTCTCCTCATCCCCCAACTATTCCACCTCCACATCAACCTCCACCGCCAAACCCC CATCGCCTCCTCCCCCACTCCGGACGATTCCGGGGTCCCACGGGTGGCCGGTAGTGGGGCCGATGCGTGATAGGCTGGACTACTTCTGGTTCCAAGGCCC CGAAGCGTTCTTCAAGAAGAGGATGGAGAAGTACAAGTCTACGGTGTTCCGTACAAACGTCCCGCCGGCGTTCCCTTTCCTCGGCGCCGGAGTCAACCCT AACGTGGTGGCGGTTCTCGACTTGGCGGTTCGCGACTGCCGGTCGTTCTCCCACATGTTCGACATGGAAGTCGTCGAGAAGAAAGACGTCCTCGTCGGAG ACTTCATGCCTAGTGTCGGGTTCACTGGGAATATGAGAACTTGCGCTTATCTTGATACCTCTGAAGCTAAACATGCTCAGATAAAGCAATTTGTGACACA CATTCTAAAACGGAGTACCAAGGTGTGGCTCTCGGAGCTCCAGCTCAACATGGACCAGATGTGGGACACCCTCGAATCCGAGCTGTCGTCGAAACCCAAT GCCAGCATCTTCTTGCCACTTCAGCAGGCCATGTTCAAGTTCCTAACCAAGTCGTTGGTCGGAGTTGACGTGGACGATGACATGGCCAAGTCTGGCCCCA CCACCATCGACACGTGGCTAGGACTCCAGCTCCTCCCTACAGTCAGCATCAACGTCATCCAACCTCTTGAGGAGATCTTCTTCCACTCCTTTCCTTACCC CTCGTTCCTAGTCAGCAGTGGGTACAATAAGCTCGCTGACTTCATCAGGACTCAAGGACGAGAAGTGGTTCAACTTGGAGTGACCGATTTTGGGTTGAGC GAGGAAGAAGCGGTTCACAACCTCCTCTTCACCCTAGGATTCAATGCCTTTGGCGGATTTTCGGTCTTCCTACCTAGCCTATTCGGACGGTTACTCAGTG AAAAAACCGGTTTACAAGACCGGCTCCGACTCGAAGCCAGGCAGAACGGTGGACCCGATTTGACATTCAACTCGGTCAAGCAAATGCCCCTCATCCAATC CGTCATCTATGAGACCCTCCGGGTCAGCCCGCCCGTTCCCAACCAATTTGCTCGAGCCAGAAAGGACTTCCAGCTCAGCTCATACGAAGCATCGTACGAG GTGAAGAAGGGCGAGCTATTGTTCGGATTCCAGCCCTTGGTGATGCGGGACCCAATGGTTTTTGACGACCCGGAGAGCTTTCAACCGGACCGGTTCATGG GCACGAAAGGGGAAGATTTGTTGAACTACTTGTACTGGTCGAACGGACCGCAAACTGGGTCGCCCAATGAGTCGAATAAGCAGTGTGTGGGCAAAGACAT CGTTATCCTCACTGCAACGTTGATTGTGGCTCACTTGTTCCGGCGGTATGACTCCATAAGTGGGGATGGCTTGAACATCACAACTCTTGAAAAGGCTAGC TAG
AA sequence Show only first row Show all	>Lus10031540 pacid=23155874 polypeptide=Lus10031540 locus=Lus10031540.g ID=Lus10031540.BGIv1.0 annot-version=v1.0 MPAIPMTTRIMASSSFSSSPNYSTSTSTSTAKPPSPPPPLRTIPGSHGWPVVGPMRDRLDYFWFQGPEAFFKKRMEKYKSTVFRTNVPPAFPFLGAGVNP NVVAVLDLAVRDCRSFSHMFDMEVVEKKDVLVGDFMPSVGFTGNMRTCAYLDTSEAKHAQIKQFVTHILKRSTKVWLSELQLNMDQMWDTLESELSSKPN ASIFLPLQQAMFKFLTKSLVGVDVDDDMAKSGPTTIDTWLGLQLLPTVSINVIQPLEEIFFHSFPYPSFLVSSGYNKLADFIRTQGREVVQLGVTDFGLS EEEAVHNLLFTLGFNAFGGFSVFLPSLFGRLLSEKTGLQDRLRLEARQNGGPDLTFNSVKQMPLIQSVIYETLRVSPPVPNQFARARKDFQLSSYEASYE VKKGELLFGFQPLVMRDPMVFDDPESFQPDRFMGTKGEDLLNYLYWSNGPQTGSPNESNKQCVGKDIVILTATLIVAHLFRRYDSISGDGLNITTLEKAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10031540 [exp]	0	1
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10035875 [exp]	3.0	0.9291
AT4G01060	MYB	CPL3, ETC3	ENHANCER OF TRY AND CPC 3, CAP...		Lus10005949 [exp]	3.2	0.9100
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017718 [exp]	3.5	0.9173
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10005464 [exp]	4.9	0.8738
AT1G53440			Leucine-rich repeat transmembr...		Lus10038153 [exp]	6.0	0.8968
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10015499 [exp]	6.5	0.9022
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10014975 [exp]	8.2	0.9119
AT4G01935			unknown protein		Lus10010062 [exp]	10.4	0.9096
AT4G39970			Haloacid dehalogenase-like hyd...		Lus10000633 [exp]	11.0	0.9164
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Lus10012360 [exp]	11.5	0.8769

Compare expression of checked genes

Lus10031540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.