Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05090 123 / 2e-29 dentin sialophosphoprotein-related (.1) AT4G20720 120 / 1e-28 dentin sialophosphoprotein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015137 [exp] 945 / 0 AT4G20720 129 / 2e-31 dentin sialophosphoprotein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G227200 [exp] 317 / 5e-102 AT1G05090 149 / 2e-38 dentin sialophosphoprotein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031541 pacid=23155921 polypeptide=Lus10031541 locus=Lus10031541.g ID=Lus10031541.BGIv1.0 annot-version=v1.0 ATGGAAGCTTTACCGATTCCCCACGACGAGATTCGCTCCCTCCGGATCTCCCTCCGCAGAGACTCAAACTTCTCCTTCTACAACCCGGAATCCGACGCAC CTCCTCATCTCCCCGATCTCCCCTCCGCCGGCGAATCAATCTCCGAGCTCGACCCTTCTCCGCCCGAACTCCGGTGTCGCCACTGCAATGGCAGGCTCCT CAGAGGTCTGGATTCGATCGCTTGCATCTTCTGCGGTAGGAAGCAGGTTACCAAGGATGGTCCTCATCCTCATCGGCCAATCAAGTTCATGGCCACTTCT GGCTCCAAGTGGCTCCTCCAGTCTCTCGGCTTGGACGGATCGGAACTTTCAGGCCAATCAATGGAAGATCAACAGCTGAACAGGCGACCGAATGTGGCAC GAAAGGACATTCCTTTATCTGAACTGTTGGATCTCGAAATACATTGGCCTACGGATTCTGACATTGGGGAAACAAAGGATGAATTGTTGGAAGAAGAGAC AGCAATCGAGAAGTTGAGAACTCTCAATTTCGAAGGGCTTGATCTCAGCAGTTTCTCCTCCAATGAGTCTAAGGTGGAAATGGAACCACCTTCTGGATTA CCTAAACAAGGCCTTAGCTTTTTCCAAGATCCTAAGGTAGAATCGGTTTCTGCATCATCGGTTGATGAACAGCTCGATTTCTTCCCTGAGCCGAGGCTAG AATCTGCTTCTGCAGCATCTGAAGATCGCAATTTGCCTTCCGTCAGTCAGCCATTTCCTAGTACTGAAGCTCAGGGTCCTACAGATCTAAGTTTGTTTGA GAGTGTTCAGCCGGCTTGTACTAGTGGTAAAGATGAAGATGAAGGTGATGACTCCTTCGCTGGCTGGGAAGTTGAGTTTCAGTCTGCTGATTCTGCTGCA GCTCAACATCAAGAATCAAAACCATTTGATCCTTTTGAAGGTTCTTTTTCGGCTGTCGATCTTTCGGCTCATTTGGAATCAGTATTTGGAGCTGGAAATG AAGCGCCTTTGGGATCAACAAGTGAGAGCACTATAAACGATTGGTTTCCAGGTGATATATTGAGTACTTCCACGAATGCTAAAGACGGGGAGAACATGGA GACGAAAACAGACACTTTCCCTCCAATGGATTTGGATTTCCTCGAAGATAATCAATTGCAAACTGCCACCAATACCATGAAAGCTGGCGGAGATGACTAC TTTGACGGCTGGAACGATTTCACAAGCTCATCGAAGCAGGATGATAGTCTCACTGTAGTACCTCCTCTTGAAAAAGCCTCAGAGATGAGCTTATTTGGTG CTATTGGCAAATCAGATAATGTCGACTCTGGTAGCCTTTCCACTGGCTTTCCACAGTCGGATCTCTTCTCCGGGATGTCTAACGATGTAAAGCATTCCAA CGAAGTTGACATCATGTGGGCTGAAACTTCAGCATCAGAGAGGACGGATGGTGGAATCCGAAGAAGCGGAGATGGAAGTGAAGAAATTGCAGCAGGTGGA GACGTTCTTCCCGGTACGAATTCAAGCTCGAAACCTGAATTGGTGGAGAAGTACATATCCCAGATGCATGATCTATCATTCATGCTGGAGAACGATCTTC CGATGCCACATAATCGAGATCCTTTGACTACACTTTCCAAGGATTAA
AA sequence Show only first row Show all	>Lus10031541 pacid=23155921 polypeptide=Lus10031541 locus=Lus10031541.g ID=Lus10031541.BGIv1.0 annot-version=v1.0 MEALPIPHDEIRSLRISLRRDSNFSFYNPESDAPPHLPDLPSAGESISELDPSPPELRCRHCNGRLLRGLDSIACIFCGRKQVTKDGPHPHRPIKFMATS GSKWLLQSLGLDGSELSGQSMEDQQLNRRPNVARKDIPLSELLDLEIHWPTDSDIGETKDELLEEETAIEKLRTLNFEGLDLSSFSSNESKVEMEPPSGL PKQGLSFFQDPKVESVSASSVDEQLDFFPEPRLESASAASEDRNLPSVSQPFPSTEAQGPTDLSLFESVQPACTSGKDEDEGDDSFAGWEVEFQSADSAA AQHQESKPFDPFEGSFSAVDLSAHLESVFGAGNEAPLGSTSESTINDWFPGDILSTSTNAKDGENMETKTDTFPPMDLDFLEDNQLQTATNTMKAGGDDY FDGWNDFTSSSKQDDSLTVVPPLEKASEMSLFGAIGKSDNVDSGSLSTGFPQSDLFSGMSNDVKHSNEVDIMWAETSASERTDGGIRRSGDGSEEIAAGG DVLPGTNSSSKPELVEKYISQMHDLSFMLENDLPMPHNRDPLTTLSKD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20720			dentin sialophosphoprotein-rel...		Lus10031541 [exp]	0	1
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10026551 [exp]	1.0	0.9080
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10034642 [exp]	3.5	0.8992
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016664 [exp]	4.9	0.8930
AT1G50380			Prolyl oligopeptidase family p...		Lus10015387 [exp]	5.5	0.8865
AT3G16060			ATP binding microtubule motor ...		Lus10037546 [exp]	9.4	0.8788
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10002569 [exp]	9.8	0.8831
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10015176 [exp]	10.7	0.8873
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10031570 [exp]	11.8	0.8921
AT3G19870			unknown protein		Lus10030556 [exp]	12.0	0.8823
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10030432 [exp]	13.9	0.8684

Compare expression of checked genes

Lus10031541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.