Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20800 232 / 3e-74 Cell differentiation, Rcd1-like protein (.1) AT5G12980 220 / 9e-70 Cell differentiation, Rcd1-like protein (.1) AT2G32550 144 / 3e-40 Cell differentiation, Rcd1-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015136 [exp] 528 / 0 AT3G20800 219 / 1e-68 Cell differentiation, Rcd1-like protein (.1) Lus10009728 [exp] 214 / 5e-67 AT3G20800 536 / 0.0 Cell differentiation, Rcd1-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G155500 [exp] 269 / 1e-88 AT5G12980 294 / 4e-99 Cell differentiation, Rcd1-like protein (.1) Potri.011G086800 [exp] 229 / 3e-73 AT3G20800 539 / 0.0 Cell differentiation, Rcd1-like protein (.1) Potri.001G359300 [exp] 228 / 1e-72 AT3G20800 530 / 0.0 Cell differentiation, Rcd1-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04078 [flax] [poplar] Rcd1 Cell differentiation family, Rcd1-like
Representative CDS sequence Show only first row Show all	>Lus10031542 pacid=23155870 polypeptide=Lus10031542 locus=Lus10031542.g ID=Lus10031542.BGIv1.0 annot-version=v1.0 ATGATGCCAAAGCAGCTGATGATGCCGCCGATGCCGGAGTACTACCGCGGTGCCGGGTTCTTCAGTGAACCTTCCTTCTTTGGTGACGCCGGCGCCAGCA GCTCGTCGTCGCCACCGCCACCGTGGGATGAAACGATGGCGTATGCTGTCCAGATGATCCATAACCTCCATAACCCTGCGACCAAGGACCAAGCTCTCGC AATCCTTGGCAAGAGTGCAATCCGTGAAAGGTTGGCGCCAATACTGTGGAATTCTAGGGGAACTGTCAACATACTTCTCGACGAGATAACTTCAGTATAC CGTTCCCTGAACGATATCCTTACCGAGAAGCAATCAACTCAGGTCTGCCATACCCTTGCTCTATTTCAGGGTCTTGCCATACATCCTGAGACGAGGTATC CGTTTATGAAAGCACGGATACCAAACTATCTCTACCCTTTTCTTGAGAGCAAGAAGACCGAAAAGCCTCATGAGTTCGTCAGGGTCACTAGCTTGGGTGT CATTGGAGCCCTACTCAAGGTTGAAGATCAAAGAATCACAAAATTCCTGCTTGAATCTAAAGTCTTCCCATGCTGCCTCTGCTGCATGGAGGTTGGCAAC AATCTGCTGACCAAAACTGTGGCAACATTCATAGTTTACAAGCTGCTAGCGACTGAGGAGGGGATGAGGTACTGCTGTGCTATAGCAGACAGGTTTTATG CGGTGAACCATCAACTGCGAAAATTGGTCGAGGTACTGGCAGACAAAGAAATCATTACTCGCTCCGGAATCGACACTGCCAGACGCCTCGTTAGGCACAT CATCTGGATCTACTCCAGGCTCTCTGAGAGTCCCAGGGTATGCAATGGACTGCAAAAGTTGATTCCGGAGAGACTCAGAGACCCTTCGATCATGAGCCTC CTCCAAGAAGATGCCGCTGCAAAACAGTGCCTGCAGAGGGTGTTCGAGAACGTTGCAAGCGGAGGCCTGCCTGAGCCACCATCTCCATCGATTGAGAATG AGATCCTGAGTCTTGGCCGTCGCAGGAAACATGGAGCTTGA
AA sequence Show only first row Show all	>Lus10031542 pacid=23155870 polypeptide=Lus10031542 locus=Lus10031542.g ID=Lus10031542.BGIv1.0 annot-version=v1.0 MMPKQLMMPPMPEYYRGAGFFSEPSFFGDAGASSSSSPPPPWDETMAYAVQMIHNLHNPATKDQALAILGKSAIRERLAPILWNSRGTVNILLDEITSVY RSLNDILTEKQSTQVCHTLALFQGLAIHPETRYPFMKARIPNYLYPFLESKKTEKPHEFVRVTSLGVIGALLKVEDQRITKFLLESKVFPCCLCCMEVGN NLLTKTVATFIVYKLLATEEGMRYCCAIADRFYAVNHQLRKLVEVLADKEIITRSGIDTARRLVRHIIWIYSRLSESPRVCNGLQKLIPERLRDPSIMSL LQEDAAAKQCLQRVFENVASGGLPEPPSPSIENEILSLGRRRKHGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10031542 [exp]	0	1
					Lus10007927 [exp]	2.4	1.0000
					Lus10023587 [exp]	3.2	1.0000
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	3.9	1.0000
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Lus10027855 [exp]	4.5	1.0000
AT3G19540			Protein of unknown function (D...		Lus10028040 [exp]	5.0	1.0000
AT1G48120			hydrolases;protein serine/thre...		Lus10015869 [exp]	6.0	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10016922 [exp]	6.5	1.0000
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10003012 [exp]	6.6	0.9685
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10039026 [exp]	6.9	1.0000
AT2G34320			Polynucleotidyl transferase, r...		Lus10039942 [exp]	7.3	1.0000

Compare expression of checked genes

Lus10031542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.