Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43660 245 / 5e-83 Vacuolar iron transporter (VIT) family protein (.1) AT3G43630 234 / 2e-78 Vacuolar iron transporter (VIT) family protein (.1) AT1G21140 226 / 2e-75 Vacuolar iron transporter (VIT) family protein (.1) AT1G76800 215 / 3e-71 Vacuolar iron transporter (VIT) family protein (.1) AT3G25190 186 / 1e-59 Vacuolar iron transporter (VIT) family protein (.1) AT2G01770 49 / 7e-07 ATVIT1, VIT1 vacuolar iron transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015135 [exp] 298 / 1e-104 AT3G43660 200 / 4e-66 Vacuolar iron transporter (VIT) family protein (.1) Lus10042804 [exp] 258 / 7e-88 AT3G43660 276 / 2e-95 Vacuolar iron transporter (VIT) family protein (.1) Lus10031922 [exp] 258 / 1e-87 AT3G43660 286 / 4e-99 Vacuolar iron transporter (VIT) family protein (.1) Lus10035086 [exp] 251 / 3e-85 AT3G43660 284 / 2e-98 Vacuolar iron transporter (VIT) family protein (.1) Lus10028596 [exp] 251 / 7e-85 AT3G43660 279 / 4e-96 Vacuolar iron transporter (VIT) family protein (.1) Lus10029776 [exp] 240 / 8e-81 AT3G43660 273 / 4e-94 Vacuolar iron transporter (VIT) family protein (.1) Lus10025685 [exp] 210 / 1e-68 AT3G43660 241 / 4e-81 Vacuolar iron transporter (VIT) family protein (.1) Lus10018150 [exp] 208 / 5e-68 AT3G43660 244 / 2e-82 Vacuolar iron transporter (VIT) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G069400 [exp] 238 / 5e-80 AT3G43630 238 / 5e-80 Vacuolar iron transporter (VIT) family protein (.1) Potri.005G190800 [exp] 237 / 1e-79 AT1G76800 232 / 6e-78 Vacuolar iron transporter (VIT) family protein (.1) Potri.018G106000 [exp] 209 / 2e-68 AT3G43660 219 / 9e-73 Vacuolar iron transporter (VIT) family protein (.1) Potri.011G146100 [exp] 105 / 2e-27 AT3G43660 97 / 3e-24 Vacuolar iron transporter (VIT) family protein (.1) Potri.001G456000 [exp] 103 / 1e-26 AT3G43660 66 / 1e-12 Vacuolar iron transporter (VIT) family protein (.1) Potri.010G104100 [exp] 49 / 5e-07 AT2G01770 320 / 2e-111 vacuolar iron transporter 1 (.1) Potri.010G104200 [exp] 45 / 1e-05 AT2G01770 384 / 1e-136 vacuolar iron transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01988 [flax] [poplar] VIT1 VIT family
Representative CDS sequence Show only first row Show all	>Lus10031543 pacid=23156057 polypeptide=Lus10031543 locus=Lus10031543.g ID=Lus10031543.BGIv1.0 annot-version=v1.0 ATGGAGGTCGAAACCCGGAAGAAGTTAGACCCTGAAGAAGAGGAACACGACTACAGCAAAAGAGGCCAATGGCTCCGAGCAGCGATACTCGGAGCCAATG ATGGTTTGGTCTCCACTGCATCCCTCATGATGGGAGTGGGTGCAGTGAGGCAAGACGTCAAGGTCATGATCCTAACCGGATTCGTGGGCCTCATAGCTGG GGCCTGTAGCATGGCGATAGGGGAGTTTGTGTCTGTCTACTCGCAGTACGACATAGAGGTTGCTAAAATGAAACGGGACAAGGAGAGAGCTATTATCGAT GGTGTGGGGGCGGAATATAAAGAAAATATTGAAGGAGAGATAATGGAGGGCCTACCGAGCCCCGCCCAGGCTGCACTGGCTTCGGGATTAGCCTTCTCGA TAGGAGCGATGGTGCCGTTAATGGCTGCTTCTTTCATTGACGAGTACAAAGTTCGTGTTGCAGTTGTGACCGGGGCAGTGACATTGGCGTTGGTTGTGTT TGGTTGGGTCGGAGCCGTGTTGGGGAAGGCGCCCGTGGTTAAGTCGTCGATGAGGGTTTTGATCTGTGGGTGGCTGGCTATGGCTCTCACCTGTGGGCTC ACTAAGTTGATGGAAATGATCACTACACATTTGCATTGA
AA sequence Show only first row Show all	>Lus10031543 pacid=23156057 polypeptide=Lus10031543 locus=Lus10031543.g ID=Lus10031543.BGIv1.0 annot-version=v1.0 MEVETRKKLDPEEEEHDYSKRGQWLRAAILGANDGLVSTASLMMGVGAVRQDVKVMILTGFVGLIAGACSMAIGEFVSVYSQYDIEVAKMKRDKERAIID GVGAEYKENIEGEIMEGLPSPAQAALASGLAFSIGAMVPLMAASFIDEYKVRVAVVTGAVTLALVVFGWVGAVLGKAPVVKSSMRVLICGWLAMALTCGL TKLMEMITTHLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43660			Vacuolar iron transporter (VIT...		Lus10031543 [exp]	0	1
					Lus10041434 [exp]	1.4	0.8174
AT2G46300			Late embryogenesis abundant (L...		Lus10010130 [exp]	3.5	0.7804
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10000168 [exp]	10.4	0.7530
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10002395 [exp]	11.6	0.7530
AT2G17950	HD	WUS1, PGA6, WUS	WUSCHEL 1, WUSCHEL, Homeodomai...		Lus10028457 [exp]	17.3	0.8161
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Lus10005834 [exp]	17.5	0.7388
AT3G58760			Integrin-linked protein kinase...		Lus10037851 [exp]	48.4	0.7392
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10030510 [exp]	60.1	0.6531
AT5G39200			unknown protein		Lus10030710 [exp]	60.4	0.6531
AT4G17920			RING/U-box superfamily protein...		Lus10030972 [exp]	60.8	0.6531

Compare expression of checked genes

Lus10031543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.