Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05100 285 / 3e-92 MAPKKK18 mitogen-activated protein kinase kinase kinase 18 (.1) AT2G32510 282 / 2e-90 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1) AT5G55090 242 / 4e-74 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT2G32500 230 / 1e-71 Stress responsive alpha-beta barrel domain protein (.1) AT4G26890 231 / 8e-70 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT1G07150 184 / 7e-52 MAPKKK13 mitogen-activated protein kinase kinase kinase 13 (.1.2) AT4G36950 167 / 3e-47 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT2G30040 168 / 3e-46 MAPKKK14 mitogen-activated protein kinase kinase kinase 14 (.1) AT3G50310 164 / 5e-46 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT5G67080 161 / 1e-44 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035284 [exp] 349 / 1e-115 AT2G32510 319 / 9e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10030042 [exp] 348 / 3e-115 AT2G32510 324 / 2e-108 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10015134 [exp] 297 / 6e-99 AT2G32500 191 / 2e-61 Stress responsive alpha-beta barrel domain protein (.1) Lus10021551 [exp] 224 / 2e-66 AT5G55090 326 / 7e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Lus10022951 [exp] 219 / 3e-65 AT4G26890 325 / 3e-107 mitogen-activated protein kinase kinase kinase 16 (.1) Lus10012668 [exp] 157 / 3e-43 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10014976 [exp] 160 / 1e-41 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10003745 [exp] 148 / 1e-40 AT4G08500 400 / 4e-137 MAPK/ERK kinase kinase 1 (.1) Lus10032279 [exp] 153 / 3e-39 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G155000 [exp] 307 / 1e-100 AT1G05100 317 / 3e-107 mitogen-activated protein kinase kinase kinase 18 (.1) Potri.014G154900 [exp] 297 / 2e-97 AT2G32500 314 / 5e-108 Stress responsive alpha-beta barrel domain protein (.1) Potri.002G228200 [exp] 296 / 2e-95 AT2G32510 321 / 2e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Potri.011G007400 [exp] 256 / 4e-79 AT5G55090 326 / 3e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.004G007700 [exp] 253 / 2e-78 AT5G55090 321 / 2e-105 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.009G073200 [exp] 199 / 2e-57 AT1G07150 360 / 9e-120 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.003G130000 [exp] 192 / 2e-56 AT5G55090 232 / 2e-72 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.001G278600 [exp] 189 / 4e-54 AT1G07150 353 / 2e-117 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.007G044800 [exp] 174 / 1e-49 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139200 [exp] 168 / 3e-47 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0032 [flax] [poplar] Dim_A_B_barrel PF07876 [flax] [poplar] Dabb Stress responsive A/B Barrel Domain
Representative CDS sequence Show only first row Show all	>Lus10031544 pacid=23155770 polypeptide=Lus10031544 locus=Lus10031544.g ID=Lus10031544.BGIv1.0 annot-version=v1.0 ATGAGCAGCAGCAGCAGCTGGACAAGAAGGCACAAGCTCGGCCAGGGATCAACCGCTGTCGTCTACTTAGCAACACCGCACAACTCCGGCGAGCCCTTCG CCGTCAAGTCCGCCGAATTTTCCCGGTCGGAGTTCCTACAGAGAGAACAGAGGATCCTGTCTTCGGTCGCCTCTCCGTATGTAGTCAAATACAGGGGATG GGAAATCACAACAGAGGAAGATGGTAGAGTTATGTACAATCTGATGATGGATTACATGCCCAGCGGCACGATCGTCGACGAAATATGCCGCCGCCGCGGC CGGAGGATGGACGAGAGGGAGATTGGATTGTACACGTGGCAGGTCCTGAAAGGTCTTGAGTATCTTCGTTCCAAAGGAATTGTTCATTGCGACGTGAAAG GGAGTAATATTTTGGTGGGACCCAATGGAGCCGCCAGGCTGGCGGACTTTGGGTGGTCGGAGCGGGGGGCGGGGGGGACGCCGATGTTTATGGCTCCGGA GGCGGCGAGTGGGGAGGAGCAGGGGCACGCCAGCGACGTGTGGGGATTGGGTTGCACGGTGATCGAGATGGCGACCGGCGGCAGGTCGGTGTGGGGAGAG GAGATAGCGGGAATTGACGACCCAATTTCGGCGATGTACCGGGTCGGGTACTCGGGTCGGCTGCCCGAGTTTCCGGACCGGATGTCGGAGGTAGGTAGGG ATTTTTTGGAGAAGTGTTTGAGGAGGGATCAGAAAGAAAGGTGGACAGCGAGTCAGCTTCTTGATCATCCATTCGTGTCGAAATTCGAGCCCTATGATTC GTGTTGTTTCGCTTCTCCGACAAGTGTTCTCGATAGAGTGTTTTGGAATTCGATCGAAGAAACTGACGGTTTGGGTTCCGAAAAAACTATTGCATCTCCT TGTTGCTCGCCGTCAGAAGCAAATGAGGAGGAGGAAGGGCGATGGAGGATTGAACGGCTAGCGATGGGTTTGGTTAAACCCATTTGGAATGATGATGATG ATGATGATTGTGGCCTTCTTAAACTGTCCTGCATTTATCACATAGTCAGGCAGACATCTTATTTCGCATCTACAGGACGAATCTCCAACGAAAATTCCGA AAACTATACCCATGCTGTTTTCATGCGTTTCCAAAGGAAGGAAGATGTAGCCAAGTTCTACGAGAACCCTTTCTACTTGGGGATTCTTGAGGAGCACGTA ACTCCTCATTGCAATGAGAAGATCTACGTAGATTACGAATCTGAAGTGGATGACGATATACTCCCCATATTTCGTAAAGGAGAGGAATACAACTACGGTT TGGAGTTCATTCATCTTATCGGCTTCGACGAGAGTTCGAATGGTGCCCCTGTGGAAGATGCTTTGGCATCTCTTGCCAAGTTGGCCAAAGAGTTCCCATC ATTAATCGTTCAATCCACGCATGGTTCAAATTTCAATCCCAGCAGCAAGGAGTATACACACGGGGTAGTCACAAGGTTTCGATCACCTGAGGCGTTTGAG TTGTTCTTGGGAAGCAAGGAATACAAAGAAGTATGGAGATCGAAATTCGAGAAGATAACCAGAAGATCACTTTCCATCCATTTCTCTGTTGACCCGGTCG GAGAGGACATTATGTAG
AA sequence Show only first row Show all	>Lus10031544 pacid=23155770 polypeptide=Lus10031544 locus=Lus10031544.g ID=Lus10031544.BGIv1.0 annot-version=v1.0 MSSSSSWTRRHKLGQGSTAVVYLATPHNSGEPFAVKSAEFSRSEFLQREQRILSSVASPYVVKYRGWEITTEEDGRVMYNLMMDYMPSGTIVDEICRRRG RRMDEREIGLYTWQVLKGLEYLRSKGIVHCDVKGSNILVGPNGAARLADFGWSERGAGGTPMFMAPEAASGEEQGHASDVWGLGCTVIEMATGGRSVWGE EIAGIDDPISAMYRVGYSGRLPEFPDRMSEVGRDFLEKCLRRDQKERWTASQLLDHPFVSKFEPYDSCCFASPTSVLDRVFWNSIEETDGLGSEKTIASP CCSPSEANEEEEGRWRIERLAMGLVKPIWNDDDDDDCGLLKLSCIYHIVRQTSYFASTGRISNENSENYTHAVFMRFQRKEDVAKFYENPFYLGILEEHV TPHCNEKIYVDYESEVDDDILPIFRKGEEYNYGLEFIHLIGFDESSNGAPVEDALASLAKLAKEFPSLIVQSTHGSNFNPSSKEYTHGVVTRFRSPEAFE LFLGSKEYKEVWRSKFEKITRRSLSIHFSVDPVGEDIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05100		MAPKKK18	mitogen-activated protein kina...		Lus10031544 [exp]	0	1
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031137 [exp]	9.3	0.7886
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Lus10012298 [exp]	18.2	0.7787
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10040868 [exp]	21.5	0.7709
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Lus10015935 [exp]	33.0	0.7698
AT3G58830			haloacid dehalogenase (HAD) su...		Lus10020774 [exp]	33.2	0.7465
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Lus10035770 [exp]	39.7	0.7545
AT4G02920			unknown protein		Lus10042685 [exp]	41.5	0.7600
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10023056 [exp]	46.5	0.7319
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10039740 [exp]	49.4	0.7539
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10037694 [exp]	50.6	0.7398

Compare expression of checked genes

Lus10031544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.