Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62280 136 / 5e-39 SLAH1 SLAC1 homologue 1 (.1) AT1G62262 129 / 2e-36 SLAH4 SLAC1 homologue 4 (.1) AT5G24030 84 / 2e-19 SLAH3 SLAC1 homologue 3 (.1) AT4G27970 82 / 2e-18 SLAH2 SLAC1 homologue 2 (.1) AT1G12480 60 / 8e-11 SLAC1, RCD3, CDI3, OZS1 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015133 [exp] 258 / 1e-85 AT1G62280 387 / 6e-133 SLAC1 homologue 1 (.1) Lus10024306 [exp] 138 / 1e-39 AT1G62280 349 / 7e-119 SLAC1 homologue 1 (.1) Lus10039312 [exp] 82 / 1e-18 AT5G24030 670 / 0.0 SLAC1 homologue 3 (.1) Lus10027553 [exp] 82 / 1e-18 AT5G24030 669 / 0.0 SLAC1 homologue 3 (.1) Lus10006678 [exp] 59 / 3e-10 AT1G12480 734 / 0.0 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) Lus10007023 [exp] 56 / 2e-09 AT1G12480 720 / 0.0 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G084901 [exp] 87 / 5e-22 AT1G62280 117 / 3e-32 SLAC1 homologue 1 (.1) Potri.015G026700 [exp] 83 / 1e-19 AT5G24030 367 / 3e-124 SLAC1 homologue 3 (.1) Potri.001G114300 [exp] 51 / 6e-08 AT1G12480 432 / 4e-149 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) Potri.012G035300 [exp] 48 / 6e-07 AT5G24030 172 / 1e-50 SLAC1 homologue 3 (.1) Potri.002G227800 [exp] 0 / 1 AT1G62280 120 / 7e-31 SLAC1 homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03595 [flax] [poplar] SLAC1 Voltage-dependent anion channel
Representative CDS sequence Show only first row Show all	>Lus10031545 pacid=23155849 polypeptide=Lus10031545 locus=Lus10031545.g ID=Lus10031545.BGIv1.0 annot-version=v1.0 ATGCTCCGGCCGGTGTTCTTCTTGTTCTTTGCCGCTCCTAGCATGGCTAGCTTGGCTTGGGGAGGCATCTCAGGGAGGTTTGATACCTCTGCTAAGATGC TCTTCTTCCTCTCCCTCTTCCTCTTCTTGTCCTTGGTTTCAAGGCCGGCCCTGTTCAGAAAATCGATGAGGAAGTTCAACATAGCATGGTGGGCATATTG TTTCCCACTAACAGTCTTGGCACTAGCATCTGTGGACTATGCTCAAGAAGTTAAGGATTCAGAGTTTGCTCATGGACTAATGCTCTTGTTATCTACTTCA TCAATCCTTGTCTCCTTTGCACTAATGGTGCTCACAGCTCTCAACACTAATACCCTTTTCCCAGATGATGATCCTGGATTGTTTAAACTTAAGAACAACA ACACTAGTACCAAGAACAAAATCAGTACCAAGAGTGACTCTATTGCCAAGTCAAGTGGAGAATTGGGGTCTTTGACAATCATGATTGAGCCTAAAGACAT AGTGAAATGA
AA sequence Show only first row Show all	>Lus10031545 pacid=23155849 polypeptide=Lus10031545 locus=Lus10031545.g ID=Lus10031545.BGIv1.0 annot-version=v1.0 MLRPVFFLFFAAPSMASLAWGGISGRFDTSAKMLFFLSLFLFLSLVSRPALFRKSMRKFNIAWWAYCFPLTVLALASVDYAQEVKDSEFAHGLMLLLSTS SILVSFALMVLTALNTNTLFPDDDPGLFKLKNNNTSTKNKISTKSDSIAKSSGELGSLTIMIEPKDIVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10031545 [exp]	0	1
AT1G80520			Sterile alpha motif (SAM) doma...		Lus10024059 [exp]	1.4	0.8337
					Lus10032385 [exp]	4.2	0.7906
AT1G52343			unknown protein		Lus10035888 [exp]	6.6	0.7434
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10025794 [exp]	6.9	0.7585
AT4G32680			unknown protein		Lus10035889 [exp]	8.8	0.7603
AT2G30330		BLOS1	BLOC subunit 1, GCN5L1 family ...		Lus10030147 [exp]	8.8	0.7897
AT1G71870			MATE efflux family protein (.1...		Lus10027277 [exp]	9.2	0.7170
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10011335 [exp]	11.8	0.7758
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10016317 [exp]	13.2	0.7679
AT1G17750		AtPEPR2	PEP1 receptor 2 (.1)		Lus10032945 [exp]	13.4	0.7016

Compare expression of checked genes

Lus10031545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.