Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42570 232 / 2e-77 B-cell receptor-associated 31-like (.1) AT1G11905 172 / 9e-54 B-cell receptor-associated protein 31-like (.1.2) AT5G48660 122 / 2e-34 B-cell receptor-associated protein 31-like (.1) AT3G07190 112 / 1e-30 B-cell receptor-associated protein 31-like (.1) AT3G20450 102 / 1e-27 B-cell receptor-associated protein 31-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015132 [exp] 312 / 4e-109 AT5G42570 258 / 7e-88 B-cell receptor-associated 31-like (.1) Lus10030043 [exp] 233 / 3e-78 AT5G42570 241 / 1e-81 B-cell receptor-associated 31-like (.1) Lus10035283 [exp] 209 / 9e-69 AT5G42570 244 / 9e-83 B-cell receptor-associated 31-like (.1) Lus10020025 [exp] 175 / 3e-55 AT1G11905 225 / 9e-75 B-cell receptor-associated protein 31-like (.1.2) Lus10011842 [exp] 126 / 6e-36 AT5G48660 270 / 1e-92 B-cell receptor-associated protein 31-like (.1) Lus10022777 [exp] 122 / 2e-34 AT5G48660 271 / 9e-93 B-cell receptor-associated protein 31-like (.1) Lus10038188 [exp] 122 / 3e-34 AT3G07190 265 / 1e-90 B-cell receptor-associated protein 31-like (.1) Lus10000048 [exp] 44 / 5e-06 AT1G11905 81 / 3e-20 B-cell receptor-associated protein 31-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G007200 [exp] 215 / 7e-71 AT5G42570 278 / 1e-95 B-cell receptor-associated 31-like (.1) Potri.004G007900 [exp] 209 / 2e-68 AT5G42570 259 / 3e-88 B-cell receptor-associated 31-like (.1) Potri.014G154800 [exp] 187 / 1e-59 AT5G42570 152 / 2e-46 B-cell receptor-associated 31-like (.1) Potri.014G191500 [exp] 134 / 4e-39 AT5G48660 237 / 2e-79 B-cell receptor-associated protein 31-like (.1) Potri.002G245300 [exp] 132 / 2e-38 AT3G07190 239 / 3e-80 B-cell receptor-associated protein 31-like (.1) Potri.011G089100 [exp] 125 / 1e-36 AT5G42570 140 / 5e-43 B-cell receptor-associated 31-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05529 [flax] [poplar] Bap31 Bap31/Bap29 transmembrane region
Representative CDS sequence Show only first row Show all	>Lus10031546 pacid=23155982 polypeptide=Lus10031546 locus=Lus10031546.g ID=Lus10031546.BGIv1.0 annot-version=v1.0 ATGATACAGCTTCTATATTCGGTGATACTCGCCGAAATGGCGCTGATTCTGGCGCTGCTGTTCAAGACGCCGCTGCGGAAGCTGGTGATCATGGCGCTGG ATCGGGTCAAGCGAGGGAGAGGCCCCGTCATGGTGAAGACCGTCTCCGGTACGGTGTTCGTCGTCCTCTGCTCCAGCCTCTACAGTATGGTCACGATTCA GAATCGCTCCATCGAGGCCGGCGCTCCCAATCCTACCGATCAGGTTCTCGAGTCCACACACCTGCTCGAAGCCTCTCTCATGGGGTTTCTGCTGTCTCTC GCGCTGATGATCGACAGGCTACACCACTACATCAGGGAGCTCCGCCAACTAAGGAAGACGATGGAAGCCGCCAAGAAACAGACTCGAGGTCTCGACGATA GCAAAAGCAGCAGCAGCAACAACCCAGATGAGCTCAAAGCACTAGGAGAAGAGGTTGCTATCCTACGCAGCAAGGTGAAGAAGATGGAAGCCGAATGTGA AGCCAAGACAAAGGAAGCTAAGGCCGCAGCTGAGAAAGCTGGTGCTGTGAGGAAACAAACCGAAGGGTTTCTTCAAGACTACGAGCAATTACAAGAGGAC AACCAGAACCTCCATAGCCAGATCGAGTCGTTAGAATCCGAGGGCAAGAAGGATATGTGA
AA sequence Show only first row Show all	>Lus10031546 pacid=23155982 polypeptide=Lus10031546 locus=Lus10031546.g ID=Lus10031546.BGIv1.0 annot-version=v1.0 MIQLLYSVILAEMALILALLFKTPLRKLVIMALDRVKRGRGPVMVKTVSGTVFVVLCSSLYSMVTIQNRSIEAGAPNPTDQVLESTHLLEASLMGFLLSL ALMIDRLHHYIRELRQLRKTMEAAKKQTRGLDDSKSSSSNNPDELKALGEEVAILRSKVKKMEAECEAKTKEAKAAAEKAGAVRKQTEGFLQDYEQLQED NQNLHSQIESLESEGKKDM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42570			B-cell receptor-associated 31-...		Lus10031546 [exp]	0	1
AT5G48630			Cyclin family protein (.1.2)		Lus10002354 [exp]	6.0	0.8328
AT5G63380			AMP-dependent synthetase and l...		Lus10036994 [exp]	9.5	0.8451
AT3G26935			DHHC-type zinc finger family p...		Lus10022451 [exp]	14.8	0.8786
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10026038 [exp]	25.1	0.8476
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10008868 [exp]	26.7	0.8481
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10001377 [exp]	30.5	0.7983
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10012149 [exp]	33.2	0.8294
AT1G15860			Domain of unknown function (DU...		Lus10039198 [exp]	41.2	0.8397
AT5G52580			RabGAP/TBC domain-containing p...		Lus10027698 [exp]	56.6	0.8116
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009477 [exp]	58.8	0.7843

Compare expression of checked genes

Lus10031546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.