Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11790 437 / 3e-153 AtADT1, ADT1 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) AT1G08250 400 / 2e-138 AtADT6, ADT6 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) AT2G27820 396 / 1e-136 ADT3, PD1 arogenate dehydratase 3, prephenate dehydratase 1 (.1) AT3G44720 389 / 7e-134 ADT4 arogenate dehydratase 4 (.1) AT3G07630 379 / 2e-130 AtADT2, ADT2 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) AT5G22630 374 / 6e-128 ADT5 arogenate dehydratase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015130 [exp] 746 / 0 AT1G11790 434 / 4e-152 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10019526 [exp] 418 / 4e-145 AT1G08250 602 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10043369 [exp] 417 / 9e-145 AT1G08250 599 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10020549 [exp] 406 / 2e-140 AT1G08250 602 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10009396 [exp] 404 / 7e-140 AT1G08250 607 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10015561 [exp] 375 / 3e-129 AT1G11790 437 / 3e-153 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10036135 [exp] 368 / 2e-126 AT3G07630 449 / 7e-158 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Lus10018128 [exp] 365 / 1e-124 AT3G07630 456 / 5e-160 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Lus10020035 [exp] 362 / 7e-124 AT1G11790 426 / 5e-149 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004700 [exp] 469 / 6e-166 AT1G11790 527 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.004G013400 [exp] 462 / 3e-163 AT1G11790 513 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.004G188100 [exp] 407 / 7e-141 AT1G08250 612 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Potri.009G148800 [exp] 405 / 3e-140 AT1G08250 606 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Potri.008G195500 [exp] 404 / 3e-140 AT3G07630 504 / 2e-179 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain CL0177 [flax] [poplar] PBP PF00800 [flax] [poplar] PDT Prephenate dehydratase
Representative CDS sequence Show only first row Show all	>Lus10031547 pacid=23155782 polypeptide=Lus10031547 locus=Lus10031547.g ID=Lus10031547.BGIv1.0 annot-version=v1.0 ATGGCAGTGAAGTCCTTTCCCGCCGTGGGTTGTGTTGCTTCTTGGCCGACACTCGGCGGAACACATTCTAAACCGGCGGCTCATGGGTCGGTGTCCTTTG CAGCAATAAGATCGGAAATGGTGGATCAGAACAAGATAGTGAGTGATGTTTCCAGGAGCCTACAGAAGGATTTCAGCTCTTTTCCAAGACCATTGACTGT TGCTGATTTTTCTGCCATTCCTGATAATGGCAAACAAATGAGGGTGTCATTCAAGGGACTACCTGGTTCATACAGTGAGGAAGCAGCTCTGAAAGCCTAC CCTCAATGTGAGACTGTACCATGTTCTGATTACGAGGATGCTTTCAAGGCGGTTGAGTTATGGCTAGCAGATAAAGCAGTTCTACCGATAGAGAACACTT CCGGCGGAAGCATCCATAGGAATTATGATTTACTTCTTCGTCACCGGCTGCATATTGTGAGCGAAGTGCAGTTGGCTTCAGACCTGTGTCTTCTGGCTAT GCCTGGGGTTAGAGTGGGAGAGTTAACTCGTGTTCTAAGTCATCCACAGGCTCTTGCATTGAGTGATACTTTCCTAAGCGAGTTAGGAGTTACTGGAGAG AGTATGAATGATACAGCAACTGCAGCTCAGTACCTTGCTGCAAATGAGCTCAGAGATGCTGGAGCTGTAGCAAGTGCCCGAGCTTCCGAACTATATGGCC TTACCATCCTGGCAGAGAAAATACAGGACGACCCGGATAATGTAACTCGTTATCTGGTTCTTGCAAGAGATCCAATAGTTCCAAGAACTGATAAACCATA CAAGACAAGTGTCGTGTTTACGCTAGACGAAGGCCCTGGAGTATTGTTTAAGGCTTTGGCAGTGTTTGCTGGTAGAGATATTAATTTGACAAAGATCGAA AGTAGGCCCCAGAGGAAACGGCCATTGAGAGTTGTTGATGATTCCAACACGGGAATCGCCAAGTATTTTGACTATCTTTTCTACATCGATTTCGAGGCTT CCATGGCCGAGCCTCGAGCCCAGAACGCTTTAGGAAATCTGCAGGAGTTCGCGACGTTTCTTCGTGTGCTTGGCTGCTATCCAATGGACACTACTATTCC ATAG
AA sequence Show only first row Show all	>Lus10031547 pacid=23155782 polypeptide=Lus10031547 locus=Lus10031547.g ID=Lus10031547.BGIv1.0 annot-version=v1.0 MAVKSFPAVGCVASWPTLGGTHSKPAAHGSVSFAAIRSEMVDQNKIVSDVSRSLQKDFSSFPRPLTVADFSAIPDNGKQMRVSFKGLPGSYSEEAALKAY PQCETVPCSDYEDAFKAVELWLADKAVLPIENTSGGSIHRNYDLLLRHRLHIVSEVQLASDLCLLAMPGVRVGELTRVLSHPQALALSDTFLSELGVTGE SMNDTATAAQYLAANELRDAGAVASARASELYGLTILAEKIQDDPDNVTRYLVLARDPIVPRTDKPYKTSVVFTLDEGPGVLFKALAVFAGRDINLTKIE SRPQRKRPLRVVDDSNTGIAKYFDYLFYIDFEASMAEPRAQNALGNLQEFATFLRVLGCYPMDTTIP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10031547 [exp]	0	1
AT3G01180		ATSS2	starch synthase 2 (.1)		Lus10033014 [exp]	11.4	0.6927
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10040738 [exp]	20.6	0.6766
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Lus10020931 [exp]	21.0	0.6610
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10032062 [exp]	64.2	0.6202
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008527 [exp]	92.9	0.6024
AT2G14860			Peroxisomal membrane 22 kDa (M...		Lus10011424 [exp]	100.7	0.5550
AT3G27470			Protein of unknown function (D...		Lus10022287 [exp]	136.4	0.5849
AT3G29575		AFP3	ABI five binding protein 3 (.1...		Lus10022764 [exp]	151.1	0.5774
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10035719 [exp]	163.6	0.5596
AT4G39955			alpha/beta-Hydrolases superfam...		Lus10023147 [exp]	163.7	0.5624

Compare expression of checked genes

Lus10031547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.