Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05260 441 / 1e-156 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT4G11290 432 / 4e-153 Peroxidase superfamily protein (.1) AT3G21770 421 / 1e-148 Peroxidase superfamily protein (.1) AT3G01190 348 / 4e-120 Peroxidase superfamily protein (.1) AT5G15180 347 / 1e-119 Peroxidase superfamily protein (.1) AT1G05240 305 / 4e-103 Peroxidase superfamily protein (.1) AT1G05250 305 / 4e-103 Peroxidase superfamily protein (.1) AT2G39040 280 / 1e-92 Peroxidase superfamily protein (.1) AT2G41480 270 / 3e-89 Peroxidase superfamily protein (.1) AT2G18150 269 / 8e-89 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015127 [exp] 649 / 0 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10027164 [exp] 553 / 0 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039680 [exp] 538 / 0 AT1G05260 458 / 3e-163 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10027163 [exp] 445 / 5e-158 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10039681 [exp] 443 / 2e-157 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10018374 [exp] 365 / 1e-126 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10007638 [exp] 353 / 4e-122 AT3G01190 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10006756 [exp] 344 / 2e-118 AT3G01190 379 / 3e-132 Peroxidase superfamily protein (.1) Lus10004163 [exp] 284 / 9e-95 AT5G06720 446 / 1e-158 peroxidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G122100 [exp] 468 / 5e-167 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.017G037900 [exp] 462 / 6e-165 AT1G05260 481 / 2e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 445 / 3e-158 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.004G023200 [exp] 364 / 3e-126 AT3G01190 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 362 / 1e-125 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1) Potri.011G027300 [exp] 360 / 9e-125 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.004G023100 [exp] 360 / 2e-124 AT3G01190 403 / 1e-141 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 348 / 5e-120 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 348 / 7e-120 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 348 / 9e-120 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10031548 pacid=23155873 polypeptide=Lus10031548 locus=Lus10031548.g ID=Lus10031548.BGIv1.0 annot-version=v1.0 ATGGAGAGAAGTTGCTTCGTAGTTGTAACCCTTTTGGCCATCATGGCCTTTGGATCAGCTCAAGCTCAGCTCAAGATGAACTTCTACTCCAAGAGCTGCC CTAAAGCCGAGCAGATCGTGTTGGGTTACGTCAACAAGCACATCCACAGCGCTCCTTCCCTCGCCGCCCCTCTCCTCCGGATGCATTTCCACGACTGCTT CGTCAGGGGATGTGATGCTTCTGTGATGTTGAACGTGACGTCGAAAAACAATGCGACGGAGAAGACTGCAGCTCCGAATTTGACACTTCGAGGGTTCGGC TTTCTTGACGCGATCAAGAAACTGCTCGAGAAAGAATGCCCCGGAGTTGTCTCTTGTGCCGATATCCTCGCCCTGTCTGCTAGAGACTCTGTTGCCTCTA CAGGCGGTCCCACCTGGAGAGTTCCGACAGGGAGGAGGGATGGAAGAATCTCGAACGCCAGTGAGGCGTTGAACGCAATCCCCCCTCCGACTAGCAACTT CACCACCCTCCAGACGTTGTTTGGGAATGTCGGTCTCAACTTGAAGGACCTCACCCTACTTTCAGCGGCCCACACGATAGGGATATCTCACTGCAACTCG TTCTCCAAGCGGCTGTACAACTTCACGGGGCGTGGGAACGGACAGGACCCGAGTCTGGACAACAACTACGCGACGAAGCTGAAGCAGAAGTGTGTGAACA CGAGCGACAACACGACCATCGTCGAGATGGACCCGGGGAGCTTCAGGACGTTCGACCGCAGCTACTTCAAGCTACTCCAGAAGAGGAGGGGATTGTTCCA ATCCGACGCGGCACTGACCACGAGCAGGACCACGAAGGCGTTCATTGACCAATTCGCGTCCGGTTCGATCCAAAACTTCTTCAAGGAGTTCGCATTGTCG ATGGAGAAGTTGGGTCGGATCAACGTGAAAACCGGGTCGGCCGGAGAGATCCGGAAAACATGTGCCTTTGTGAATTGA
AA sequence Show only first row Show all	>Lus10031548 pacid=23155873 polypeptide=Lus10031548 locus=Lus10031548.g ID=Lus10031548.BGIv1.0 annot-version=v1.0 MERSCFVVVTLLAIMAFGSAQAQLKMNFYSKSCPKAEQIVLGYVNKHIHSAPSLAAPLLRMHFHDCFVRGCDASVMLNVTSKNNATEKTAAPNLTLRGFG FLDAIKKLLEKECPGVVSCADILALSARDSVASTGGPTWRVPTGRRDGRISNASEALNAIPPPTSNFTTLQTLFGNVGLNLKDLTLLSAAHTIGISHCNS FSKRLYNFTGRGNGQDPSLDNNYATKLKQKCVNTSDNTTIVEMDPGSFRTFDRSYFKLLQKRRGLFQSDAALTTSRTTKAFIDQFASGSIQNFFKEFALS MEKLGRINVKTGSAGEIRKTCAFVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10031548 [exp]	0	1
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10030097 [exp]	2.0	0.9793
AT4G02300			Plant invertase/pectin methyle...		Lus10001466 [exp]	5.3	0.9771
AT5G45840			Leucine-rich repeat protein ki...		Lus10015277 [exp]	6.2	0.9631
AT4G02320			Plant invertase/pectin methyle...		Lus10001467 [exp]	6.5	0.9751
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10000481 [exp]	7.5	0.9658
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000683 [exp]	8.4	0.9658
					Lus10001790 [exp]	9.2	0.9658
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10017288 [exp]	9.6	0.9272
AT5G13660			unknown protein		Lus10005963 [exp]	9.9	0.9658
AT5G20860			Plant invertase/pectin methyle...		Lus10017665 [exp]	10.6	0.9612

Compare expression of checked genes

Lus10031548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.