Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05870 158 / 6e-50 APC11 anaphase-promoting complex/cyclosome 11 (.1.2) AT5G20570 67 / 6e-14 HRT1, ROC1, RBX1, ATRBX1 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) AT3G42830 65 / 3e-13 RING/U-box superfamily protein (.1) AT2G32360 60 / 6e-11 Ubiquitin-like superfamily protein (.1) AT5G37280 41 / 0.0003 RING/U-box superfamily protein (.1) AT5G40250 41 / 0.0006 RING/U-box superfamily protein (.1) AT3G54780 41 / 0.0006 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT5G37230 40 / 0.0006 RING/U-box superfamily protein (.1) AT5G26640 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015126 [exp] 184 / 3e-59 AT3G05870 156 / 2e-50 anaphase-promoting complex/cyclosome 11 (.1.2) Lus10015125 [exp] 178 / 2e-57 AT2G32360 61 / 1e-12 Ubiquitin-like superfamily protein (.1) Lus10027183 [exp] 92 / 5e-24 AT2G32360 66 / 9e-15 Ubiquitin-like superfamily protein (.1) Lus10039658 [exp] 84 / 7e-21 AT2G32360 69 / 4e-16 Ubiquitin-like superfamily protein (.1) Lus10013153 [exp] 67 / 6e-14 AT5G20570 206 / 2e-70 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) Lus10015667 [exp] 65 / 3e-13 AT5G20570 200 / 5e-68 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) Lus10011702 [exp] 42 / 0.0002 AT4G28890 231 / 1e-71 RING/U-box superfamily protein (.1) Lus10009511 [exp] 41 / 0.0007 AT2G20030 228 / 3e-71 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G037701 [exp] 115 / 1e-33 AT3G05870 123 / 5e-39 anaphase-promoting complex/cyclosome 11 (.1.2) Potri.007G122500 [exp] 91 / 1e-23 AT2G32360 66 / 2e-14 Ubiquitin-like superfamily protein (.1) Potri.017G037500 [exp] 91 / 2e-23 AT2G32360 67 / 2e-15 Ubiquitin-like superfamily protein (.1) Potri.001G167400 [exp] 67 / 3e-14 AT5G20570 203 / 3e-69 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) Potri.003G067100 [exp] 67 / 4e-14 AT5G20570 206 / 2e-70 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) Potri.006G141300 [exp] 66 / 6e-14 AT5G20570 209 / 1e-71 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) Potri.002G140600 [exp] 43 / 0.0001 AT3G60220 194 / 3e-59 TOXICOS EN LEVADURA 4 (.1) Potri.003G093100 [exp] 42 / 0.0002 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 42 / 0.0002 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.011G147900 [exp] 41 / 0.0003 AT5G47610 123 / 1e-35 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031549 pacid=23155968 polypeptide=Lus10031549 locus=Lus10031549.g ID=Lus10031549.BGIv1.0 annot-version=v1.0 ATGATGGTGGTGGTGGAGATATTGACAGGCAATCTCTTCCATGTTGATGTAAGGGAAGATGGCACGGTTGGCGATCTACGGCGAGCCATCTCTGAGCAGC AGAAGCTCCCCGTTGATCGTCTGGTACCGATGCTGATGCAATTTGATGGGAGTATGACTCGTTTGATTACGAATGAAGACGATCAAGGTGGGAATGATCA TGATTCATCTCTAGCTGAATTTGGTGTTCATGATGGCTCTCACATCTATCTCTTCTTCAGTCCTTTAGATGATGATGGTGGATCTTCTCACAACCTTGAT TTCACTTGGCCTGAGTTCTTGTATAAAAGCTTTCCCTTGACTGATTCCCCCCTTCTTGAAACCTTTCTTCTGCCTGGGGATATCCAACAGAGTAAGTTTG TCCCTAACCATTCTCTTTCCTCTTCCATTCGTGCTTTTACTTGTCTGATAAACTCCAATGGTTGTTCAATCTTACATCATAGGTGGCATGCTGTTGCTTC GTGGACTTGGGATGCGAAAGATGAGACCTGCGGGATATGCAGGATGGCTTTTGATGGTTGCTGTAATCACTGTAAACTCCCTGGTGACGATTGCCCTCTC ATCTGGGGACAGTGTAACCACGCTTTTCATCTCCATTGCATCCTGAAATGGGTGAACTCGCAGACTTCTCAAGCTCACTGCCCTATGTGCCGCGGGGAAT GGCAGTTCAAAGACTCATAA
AA sequence Show only first row Show all	>Lus10031549 pacid=23155968 polypeptide=Lus10031549 locus=Lus10031549.g ID=Lus10031549.BGIv1.0 annot-version=v1.0 MMVVVEILTGNLFHVDVREDGTVGDLRRAISEQQKLPVDRLVPMLMQFDGSMTRLITNEDDQGGNDHDSSLAEFGVHDGSHIYLFFSPLDDDGGSSHNLD FTWPEFLYKSFPLTDSPLLETFLLPGDIQQSKFVPNHSLSSSIRAFTCLINSNGCSILHHRWHAVASWTWDAKDETCGICRMAFDGCCNHCKLPGDDCPL IWGQCNHAFHLHCILKWVNSQTSQAHCPMCRGEWQFKDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05870		APC11	anaphase-promoting complex/cyc...		Lus10031549 [exp]	0	1
AT3G22210			unknown protein		Lus10003811 [exp]	3.0	0.8759
AT3G55240			Plant protein 1589 of unknown ...		Lus10003293 [exp]	12.0	0.8191
AT1G13380			Protein of unknown function (D...		Lus10034324 [exp]	12.8	0.7885
AT4G22950	MADS	AGL19	AGAMOUS-like 19 (.1)		Lus10014143 [exp]	14.3	0.8485
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10021037 [exp]	17.3	0.8222
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10035437 [exp]	18.0	0.8058
AT5G15802			unknown protein		Lus10008785 [exp]	20.4	0.8331
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10006169 [exp]	20.9	0.7753
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10002020 [exp]	21.4	0.8363
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10032748 [exp]	23.5	0.7677

Compare expression of checked genes

Lus10031549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.