Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27130 207 / 2e-70 Translation initiation factor SUI1 family protein (.1) AT5G54760 205 / 9e-70 Translation initiation factor SUI1 family protein (.1.2.3) AT1G54290 205 / 2e-69 Translation initiation factor SUI1 family protein (.1) AT5G54940 162 / 1e-52 Translation initiation factor SUI1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015124 [exp] 226 / 9e-78 AT4G27130 209 / 8e-72 Translation initiation factor SUI1 family protein (.1) Lus10039660 [exp] 209 / 6e-71 AT4G27130 216 / 1e-74 Translation initiation factor SUI1 family protein (.1) Lus10027181 [exp] 209 / 6e-71 AT4G27130 216 / 1e-74 Translation initiation factor SUI1 family protein (.1) Lus10021532 [exp] 152 / 1e-48 AT5G54940 169 / 9e-56 Translation initiation factor SUI1 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G122700 [exp] 204 / 3e-69 AT4G27130 217 / 5e-75 Translation initiation factor SUI1 family protein (.1) Potri.011G134700 [exp] 204 / 4e-69 AT4G27130 213 / 3e-73 Translation initiation factor SUI1 family protein (.1) Potri.001G418600 [exp] 203 / 7e-69 AT1G54290 218 / 2e-75 Translation initiation factor SUI1 family protein (.1) Potri.007G122600 [exp] 202 / 2e-68 AT4G27130 215 / 3e-74 Translation initiation factor SUI1 family protein (.1) Potri.017G037100 [exp] 183 / 4e-61 AT1G54290 187 / 2e-63 Translation initiation factor SUI1 family protein (.1) Potri.010G151700 [exp] 161 / 2e-52 AT5G54940 170 / 2e-56 Translation initiation factor SUI1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01253 [flax] [poplar] SUI1 Translation initiation factor SUI1
Representative CDS sequence Show only first row Show all	>Lus10031550 pacid=23155806 polypeptide=Lus10031550 locus=Lus10031550.g ID=Lus10031550.BGIv1.0 annot-version=v1.0 ATGTTGCAGCATTTGAAACCACTTGTTAGCAAACAAGCAAGCACACAAGGGCGTTTGGTTTGGTGGTTTCAGTTCTACGTTTTCCATCCAAAGTTCATGT CTTTGGACGAACAGATCGCAACCCCTTTCGATCCTTTTGCTGATGCAAATGCTGAGGACTCGGGCGCTGGTACGAAAGAGTACGTCCACATCCGCATACA GCAGCGAAATGGGAGGAAGAGCCTGACGACTGTGCAAGGGTTGAAGAAAGACTTTAGCTACAACAAGATACTCAAGCACCTAAAGAAGGAGTTCTGCTGT AATGGTACTGTTGTCCAGGACCCTGAGTTAGGCCAGGTGATCCAGCTTCAAGGTGACCAGAGGAAGAACGCTTCCACGTTCCTAGTGCAGGCTGGAATTG TGAAGAAGGATAACATCAAGATCCATGGTTTCTAA
AA sequence Show only first row Show all	>Lus10031550 pacid=23155806 polypeptide=Lus10031550 locus=Lus10031550.g ID=Lus10031550.BGIv1.0 annot-version=v1.0 MLQHLKPLVSKQASTQGRLVWWFQFYVFHPKFMSLDEQIATPFDPFADANAEDSGAGTKEYVHIRIQQRNGRKSLTTVQGLKKDFSYNKILKHLKKEFCC NGTVVQDPELGQVIQLQGDQRKNASTFLVQAGIVKKDNIKIHGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27130			Translation initiation factor ...		Lus10031550 [exp]	0	1
AT4G29070			Phospholipase A2 family protei...		Lus10035314 [exp]	2.4	0.8552
AT2G18050		HIS1-3	histone H1-3 (.1.2)		Lus10014267 [exp]	5.0	0.8467
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10000920 [exp]	5.5	0.8624
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10020392 [exp]	5.7	0.8473
AT5G46030			unknown protein		Lus10015293 [exp]	8.1	0.8532
AT1G76570			Chlorophyll A-B binding family...		Lus10015235 [exp]	8.8	0.8442
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10009571 [exp]	13.2	0.8388
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10025201 [exp]	14.8	0.8175
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030583 [exp]	16.2	0.8180
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10018958 [exp]	21.0	0.8364

Compare expression of checked genes

Lus10031550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.