Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17880 216 / 9e-73 ATBTF3 basic transcription factor 3 (.1) AT1G73230 201 / 7e-67 Nascent polypeptide-associated complex NAC (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015123 [exp] 253 / 8e-88 AT1G17880 253 / 1e-87 basic transcription factor 3 (.1) Lus10039661 [exp] 238 / 1e-81 AT1G17880 253 / 2e-87 basic transcription factor 3 (.1) Lus10027180 [exp] 201 / 3e-67 AT1G17880 238 / 1e-81 basic transcription factor 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G078300 [exp] 231 / 3e-79 AT1G73230 197 / 2e-65 Nascent polypeptide-associated complex NAC (.1) Potri.017G141100 [exp] 223 / 8e-76 AT1G73230 196 / 3e-65 Nascent polypeptide-associated complex NAC (.1) Potri.015G029800 [exp] 186 / 3e-61 AT1G17880 232 / 4e-79 basic transcription factor 3 (.1) Potri.012G037900 [exp] 183 / 6e-60 AT1G73230 225 / 1e-76 Nascent polypeptide-associated complex NAC (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01849 [flax] [poplar] NAC NAC domain
Representative CDS sequence Show only first row Show all	>Lus10031551 pacid=23155878 polypeptide=Lus10031551 locus=Lus10031551.g ID=Lus10031551.BGIv1.0 annot-version=v1.0 ATGAATCGGGAGAAGCTAATGAAGATGGCCGGCTCCGTTCGTACAGGAGGAAAGGGAACCGTCCGCAGAAAGAAGAAGGCTGTGCACAAATCGACCACCA CCGACGACAAGAAGCTTCAGAGCACGCTGAAGAGGATAGGTGTCAACACCATCCCAGCTATTGAGGAAGTCAACATCTTCAAGGATGATTTGGTGATTCA GTTTGTGAACCCTAAAGTTCAGGCCTCAGTTGTTGCCAACACTTGGGTTATCACTGGTTCTCCTCAGACCAGAAAACTTCAAGATATTCTTCCAGGAATC ATCAACCAGCTTGGTCCGGACAACTTGGACAACCTCAAGAAGTTGGCTGAGCAGTTCCAAAAGGAGGCACCAGGCGCTACCTTGGGAGCAGTCCAGGAGG AAGATGATGATGATGTCCCGGAACTGGTAGCAGGGGAGACATTTGAAGCTGCAGCAGCAGAAGAAACTAAAGCTTAA
AA sequence Show only first row Show all	>Lus10031551 pacid=23155878 polypeptide=Lus10031551 locus=Lus10031551.g ID=Lus10031551.BGIv1.0 annot-version=v1.0 MNREKLMKMAGSVRTGGKGTVRRKKKAVHKSTTTDDKKLQSTLKRIGVNTIPAIEEVNIFKDDLVIQFVNPKVQASVVANTWVITGSPQTRKLQDILPGI INQLGPDNLDNLKKLAEQFQKEAPGATLGAVQEEDDDDVPELVAGETFEAAAAEETKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10031551 [exp]	0	1
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10016432 [exp]	1.7	0.8971
AT3G16780			Ribosomal protein L19e family ...		Lus10023388 [exp]	2.8	0.8601
AT5G06360			Ribosomal protein S8e family p...		Lus10021274 [exp]	3.7	0.8632
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10016992 [exp]	4.2	0.8886
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10021844 [exp]	4.7	0.8464
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10006609 [exp]	4.9	0.8928
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Lus10006914 [exp]	5.3	0.8879
AT1G20370			Pseudouridine synthase family ...		Lus10005641 [exp]	5.5	0.8695
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10038846 [exp]	6.9	0.8350
AT1G60080			3'-5'-exoribonuclease family p...		Lus10021789 [exp]	6.9	0.8456

Compare expression of checked genes

Lus10031551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.