Plant FIBer expression Database

Lus10031552 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G21720 933 / 0 ICL isocitrate lyase (.1)
AT1G21440 48 / 1e-05 Phosphoenolpyruvate carboxylase family protein (.1)
AT1G77060 47 / 2e-05 Phosphoenolpyruvate carboxylase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015122
[exp]
1104 / 0 AT3G21720 1003 / 0.0 isocitrate lyase (.1)
Lus10025529
[exp]
44 / 0.0003 AT2G43180 608 / 0.0 Phosphoenolpyruvate carboxylase family protein (.1.2.3.4)
Lus10026743
[exp]
44 / 0.0003 AT2G43180 600 / 0.0 Phosphoenolpyruvate carboxylase family protein (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G036900
[exp]
945 / 0 AT3G21720 924 / 0.0 isocitrate lyase (.1)
Potri.007G122900
[exp]
940 / 0 AT3G21720 951 / 0.0 isocitrate lyase (.1)
Potri.002G231000
[exp]
45 / 0.0002 AT2G43180 589 / 0.0 Phosphoenolpyruvate carboxylase family protein (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0151 PK_TIM PF00463 ICL Isocitrate lyase family
Representative CDS sequence
>Lus10031552 pacid=23155898 polypeptide=Lus10031552 locus=Lus10031552.g ID=Lus10031552.BGIv1.0 annot-version=v1.0
ATGGCTGCATCATCTTACAACTCTGTCCCTTCCATGATAATGGAGGAAGAAGGGAGGTTCCAAGCAGAAGTAGCAGAAGTGCAAGCATGGTGGAACTCCG
AGAGGTTCAAGCTAACCCACCGTCCTTACTCCGCCGAGGACGTTGTGGCCCTCCGCGGTAACCTCCATCAATCGTACGGCTCGAACGAGATGGCTAAGAA
GTTGTGGCGAACCCTCAAGACCCACCAAGCCAACGGGACCGCCTCCCGAACCTTTGGCGCCCTCGACCCGGTTCAGGTGACCATGATGGCGAAGCACTTG
GACTCGATCTACGTGTCGGGCTGGCAATGCTCGTCAACACACACCACAACCAACGAACCAGGCCCGGACCTGGCCGATTACCCGTACGACACAGTACCGA
ACAAGGTTGAACACCTATTCTGCGCGCAGCAGTACCACGACAGGAAGCAGAGGGAAGCCAGGATGAGCATGAGCCGTGAGGAACGGGCTCGAACCCCTTA
CGTCGATTACTTGAAGCCCATCATCGCCGACGGTGACACCGGGTTCGGAGGCACCACTGCCACGGTCAAGCTCTGCAAACTGTTCGTGGAGCGTGGCGCT
GCAGGAGTTCATATCGAGGACCAGTCATCGGTGACGAAGAAATGCGGCCACATGGCCGGAAAAGTCCTGGTAGCAGTGAGCGAGCACATCAACCGTCTAG
TCGCCGCAAGGCTCCAATTCGACGTAATGGGAGTCGAAACAGTACTCGTAGCAAGAACAGACGCCGTGGCCGCCACTTTAATCCAGACCAACATCGACCC
TCGCGACCACCAGTTCATATTGGGAGCCACCAATCCCGATCTCCGTGGCAAAAGCTTAGCGACCGTTCTAGCAGAAGGAATGGCAATGGGGAAGACCGGA
TCGGAGCTGCAAGCCATAGAAGACAACTGGGTCCAATCAGCCTCTTTGAGGACTTTCTCCGAACACGTGGTGAGCGAGATTCAAAAACAGCGCATTTCGC
AAGCTGAGAAACAGAGGAAGGTCCAAGAATGGATGAATCAAACATCTTACGACAAATCTCCATCCCACGATCAAGCATTGTCAATCGCCGCTCAATTGGG
TGTCCAAAATCTCTTCTGGGACTGGGATTTACCACGAACTCGTGAAGGATTCTACCGATTCAAAGGCTCGGTGATGGCTGCGGTAGTTCGAGGCCGAGCA
TTTGCTCAAATTGCTGACATCATCTGGATGGAGACTTCCAGTCCTGATCTGGTCGAATGCACGGAATTCTCCAGCGGGATGAAGTCTTTTACTCCCGAAA
CGATGCTGGCGTACAATTTGTCGCCGTCGTTCAACTGGGATGCTTCGGGGATGAACGACGGCCAGATGATGGATTTCATTCCGAAGATTGCGAGGATGGG
GTTCTGCTGGCAGTTCATTACTCTTGCTGGGTTCCATGCGGATGCTCTTGTGACGGATACTTTCGCGAAGGATTTCGCGAGGAGAGGGATGCTGGCTTAT
GTGGAGAGGATTCAGAGGGAGGAGAGGAAGCATGGCGTGGATACTCTGGCTCATCAGAAATGGTCTGGTGCTAACTTTTATGATCGGTATTTGAAGACTG
TTCAGGGCGGGATCTCTTCAACTGCTGCTATGGGCAAAGGTGTGACCGAGGAGCAGTTCAAGGAGACATGGACTAGGCCGGGAGGCGTGATGGAGATGGG
TGGAGGGGGTGAAGTTGTTGCCAAATCCAGGATGTAA
AA sequence
>Lus10031552 pacid=23155898 polypeptide=Lus10031552 locus=Lus10031552.g ID=Lus10031552.BGIv1.0 annot-version=v1.0
MAASSYNSVPSMIMEEEGRFQAEVAEVQAWWNSERFKLTHRPYSAEDVVALRGNLHQSYGSNEMAKKLWRTLKTHQANGTASRTFGALDPVQVTMMAKHL
DSIYVSGWQCSSTHTTTNEPGPDLADYPYDTVPNKVEHLFCAQQYHDRKQREARMSMSREERARTPYVDYLKPIIADGDTGFGGTTATVKLCKLFVERGA
AGVHIEDQSSVTKKCGHMAGKVLVAVSEHINRLVAARLQFDVMGVETVLVARTDAVAATLIQTNIDPRDHQFILGATNPDLRGKSLATVLAEGMAMGKTG
SELQAIEDNWVQSASLRTFSEHVVSEIQKQRISQAEKQRKVQEWMNQTSYDKSPSHDQALSIAAQLGVQNLFWDWDLPRTREGFYRFKGSVMAAVVRGRA
FAQIADIIWMETSSPDLVECTEFSSGMKSFTPETMLAYNLSPSFNWDASGMNDGQMMDFIPKIARMGFCWQFITLAGFHADALVTDTFAKDFARRGMLAY
VERIQREERKHGVDTLAHQKWSGANFYDRYLKTVQGGISSTAAMGKGVTEEQFKETWTRPGGVMEMGGGGEVVAKSRM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G21720 ICL isocitrate lyase (.1) Lus10031552
[exp]
0 1
Lus10016593
[exp]
9.0 1.0000
Lus10028932
[exp]
9.1 1.0000
AT4G12520 Bifunctional inhibitor/lipid-t... Lus10032263
[exp]
9.3 0.9999
AT1G06260 Cysteine proteinases superfami... Lus10002184
[exp]
9.4 0.9999
AT3G21720 ICL isocitrate lyase (.1) Lus10015122
[exp]
10.1 0.9979
AT1G18400 bHLH bHLH044, BEE1 BR enhanced expression 1 (.1) Lus10033562
[exp]
10.5 0.9972
Lus10017783
[exp]
12.7 1.0000
AT4G15480 UGT84A1 UDP-Glycosyltransferase superf... Lus10027862
[exp]
13.8 0.9991
AT1G04100 AUX_IAA IAA10 indoleacetic acid-induced prot... Lus10001501
[exp]
14.2 0.9982
AT4G34760 SAUR-like auxin-responsive pro... Lus10028466
[exp]
15.0 0.9970

Lus10031552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.