Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03800 313 / 1e-106 ATSYP131, SYP131 syntaxin of plants 131 (.1) AT5G08080 310 / 2e-105 ATSYP132, SYP132 syntaxin of plants 132 (.1.2.3) AT1G11250 237 / 4e-77 ATSYP125, SYP125 syntaxin of plants 125 (.1) AT1G61290 229 / 5e-74 ATSYP124, SYP124 syntaxin of plants 124 (.1) AT4G03330 229 / 7e-74 ATSYP123, SYP123 syntaxin of plants 123 (.1) AT3G11820 222 / 7e-71 PEN1, AT-SYR1, ATSYR1, ATSYP121, SYP121 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) AT3G52400 209 / 2e-65 ATSYP122, SYP122 syntaxin of plants 122 (.1) AT1G08560 184 / 3e-56 KN, ATSYP111, SYP111 KNOLLE, syntaxin of plants 111 (.1) AT2G18260 137 / 2e-38 ATSYP112, SYP112 syntaxin of plants 112 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015121 [exp] 459 / 2e-164 AT3G03800 306 / 1e-104 syntaxin of plants 131 (.1) Lus10010655 [exp] 313 / 4e-107 AT3G03800 432 / 6e-154 syntaxin of plants 131 (.1) Lus10006735 [exp] 231 / 2e-74 AT1G61290 491 / 3e-177 syntaxin of plants 124 (.1) Lus10013589 [exp] 227 / 9e-73 AT3G11820 437 / 2e-155 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10021263 [exp] 226 / 4e-72 AT3G11820 436 / 3e-154 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10020089 [exp] 226 / 1e-71 AT1G61290 467 / 2e-166 syntaxin of plants 124 (.1) Lus10018441 [exp] 224 / 1e-71 AT1G61290 491 / 4e-177 syntaxin of plants 124 (.1) Lus10011244 [exp] 221 / 1e-70 AT1G61290 487 / 2e-175 syntaxin of plants 124 (.1) Lus10016173 [exp] 221 / 2e-70 AT3G11820 432 / 2e-152 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G123000 [exp] 404 / 8e-142 AT3G03800 300 / 1e-100 syntaxin of plants 131 (.1) Potri.019G036700 [exp] 328 / 1e-112 AT3G03800 391 / 1e-137 syntaxin of plants 131 (.1) Potri.004G035400 [exp] 235 / 4e-76 AT1G61290 490 / 8e-177 syntaxin of plants 124 (.1) Potri.011G043700 [exp] 235 / 5e-76 AT1G61290 456 / 3e-163 syntaxin of plants 124 (.1) Potri.013G053200 [exp] 229 / 1e-73 AT1G08560 430 / 8e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.019G030800 [exp] 225 / 5e-72 AT1G08560 431 / 3e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.006G202200 [exp] 224 / 1e-71 AT3G11820 412 / 3e-145 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.016G068600 [exp] 218 / 1e-69 AT3G11820 421 / 5e-149 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.007G023100 [exp] 159 / 9e-47 AT2G18260 352 / 3e-122 syntaxin of plants 112 (.1) Potri.009G117900 [exp] 154 / 9e-45 AT2G18260 298 / 4e-101 syntaxin of plants 112 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00804 [flax] [poplar] Syntaxin Syntaxin CL0445 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10031553 pacid=23155788 polypeptide=Lus10031553 locus=Lus10031553.g ID=Lus10031553.BGIv1.0 annot-version=v1.0 ATGAACGACCTGCTCACGGACTCGTTCGTGGGTCAAACCAACCGGGTCCAGAACAATGATATCGAAATGGGAGTGCAAAGTCCGAGTCCTAGCCAGAGCT CCAGGAGTAGCTCTGATATGGGAATGGGAAGTTTCAATAAGCAGATACAAGAAGTTGAGAAAAACGTCGACAAAGTTGCTGGCCTGCTGAAGAGTTTGAA GGATGCTAACGAGGAGTCGAAGACTGTCACGAAAGCTTCGGCAATGAAAGCCATCAAGAAGCGAATGGAGAAGGACATCGACGAAGTGGGAAAGACAGCA CGTTTCGTCAAAGCAAAACTCGAAGCAATAAACAAAGATAACTTAGCGAATCGACAGAAGCCTGGCTGCGAGAAGGGTACTGGTGTTGACAGAGCTAGGA TGAATGTTACAAATTCGTTAACGAAGAAGTTCAGAGATCTGATGACTGAGTTTCAGACCCTAAGGCAAAAGATACAAGACGAATATCGCGAGGTTGTCGA GCGAAGAGTCATGACAGTTACTGGAGCTAAACCGGATGAAGAGACAATCGACCAACTGATTGAGACAGGAGACAGTGAGCAGATCTTTCAGAACGCGATC CAAGAAATGGGCCGAGGACAGGTGTTGAACACGGTGCAAGAAATCCACGAGAGGCATGATGCGGTGAAGGAAATCGAAAAGAAGCTCCTCGACTTACACC AAATATACCTTGACATGGCTGTACTCGTCGAGGCTCAGGGAGAGATACTAGACAACATCGAGAACCAGGTGACGAATGCAGTAGATCATATACAATCGGG GACCGATGCGCTCCAAACGGCAAAGAGCCTGCAGAAGAACTCAAGAAAGTGCATGACCATTGCCATCATCCTCTTCTTGCTCATTGCAAGTTTCATGCTC CTTGCCATCTTCAAACCATGGAAGAAGAAGCAGTAA
AA sequence Show only first row Show all	>Lus10031553 pacid=23155788 polypeptide=Lus10031553 locus=Lus10031553.g ID=Lus10031553.BGIv1.0 annot-version=v1.0 MNDLLTDSFVGQTNRVQNNDIEMGVQSPSPSQSSRSSSDMGMGSFNKQIQEVEKNVDKVAGLLKSLKDANEESKTVTKASAMKAIKKRMEKDIDEVGKTA RFVKAKLEAINKDNLANRQKPGCEKGTGVDRARMNVTNSLTKKFRDLMTEFQTLRQKIQDEYREVVERRVMTVTGAKPDEETIDQLIETGDSEQIFQNAI QEMGRGQVLNTVQEIHERHDAVKEIEKKLLDLHQIYLDMAVLVEAQGEILDNIENQVTNAVDHIQSGTDALQTAKSLQKNSRKCMTIAIILFLLIASFML LAIFKPWKKKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Lus10031553 [exp]	0	1
AT4G17830			Peptidase M20/M25/M40 family p...		Lus10040090 [exp]	3.9	0.8909
AT1G25500			Plasma-membrane choline transp...		Lus10041476 [exp]	4.5	0.8667
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10004821 [exp]	5.5	0.8726
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10042247 [exp]	8.2	0.8725
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10033099 [exp]	8.2	0.8789
AT1G18835	ZF_HD	MIF3	mini zinc finger 3, mini zinc ...		Lus10002058 [exp]	9.2	0.8655
AT4G19670			RING/U-box superfamily protein...		Lus10018293 [exp]	10.6	0.8508
AT5G19070			SNARE associated Golgi protein...		Lus10004421 [exp]	14.7	0.8625
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10002581 [exp]	18.3	0.8566
AT1G27170			transmembrane receptors;ATP bi...		Lus10020533 [exp]	18.4	0.8373

Compare expression of checked genes

Lus10031553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.