Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54200 47 / 2e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G46150 44 / 2e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G05975 40 / 0.0004 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G23930 40 / 0.0005 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015120 [exp] 312 / 6e-110 AT2G46150 56 / 8e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027178 [exp] 147 / 6e-45 AT2G46150 47 / 2e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027179 [exp] 142 / 5e-43 AT4G23610 52 / 3e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039662 [exp] 140 / 3e-42 AT4G23610 50 / 1e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039664 [exp] 135 / 2e-40 AT2G46150 74 / 3e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027177 [exp] 127 / 8e-37 AT2G46150 77 / 2e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10040941 [exp] 121 / 5e-34 AT3G54200 63 / 1e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10009831 [exp] 105 / 4e-28 AT3G54200 54 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039665 [exp] 96 / 1e-24 AT3G54200 52 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G230400 [exp] 100 / 2e-26 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G025100 [exp] 84 / 4e-20 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G165100 [exp] 58 / 2e-10 AT2G46150 184 / 1e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098200 [exp] 52 / 2e-08 AT1G64065 102 / 2e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G133400 [exp] 40 / 0.0003 AT2G46150 164 / 7e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10031554 pacid=23156044 polypeptide=Lus10031554 locus=Lus10031554.g ID=Lus10031554.BGIv1.0 annot-version=v1.0 ATGGGGCTCGAACACAGAGGTTCGAGGGTTAGAAGCATGTACGTGTGCGCAATAACGACGACAATTTTCTTTGGGATTGCCGTCGTCGTTGCAATAGCCC TGGGGTTCACGGTCTTCAGGCCGAGAGACCCAAATGTCGCGGTCTACATGGTGGGTTTGAAGGACCACAGCATAACCGACTTCGTGTTCGCGGCGAGTAA TGTGTCGACCGCGATGATCATATCCATAAACAACGGGAACTATGTTGGTTTCAAGTACGACAACGCGACCAGCCTGATCCGGTACAACGGTATGGTCGTG GGGGAGGTTCGTGTCGAGGGGAAAGAGGTCGCGGCTCGCTCGCAGGTGAACGTGACCACGACGGCCGTCCTGATGGCGCCCGAGTTGATGGCGAAGTCGG TCAATGAGATCTCGTCGGGGAAGCTGAACCTGACCTCTAGCGTGACACTGCACGGTAGGTCGACGCTGTTGGGGGTCAAGGTGAGGGCTTCGGCACACAC AGAGTGTAACATGACGCTCGTGTTGGGGGAGGTGTTGAGTGGGAATAGCTCGTGCTGGAGTAGGCTCAAGATTGAATGA
AA sequence Show only first row Show all	>Lus10031554 pacid=23156044 polypeptide=Lus10031554 locus=Lus10031554.g ID=Lus10031554.BGIv1.0 annot-version=v1.0 MGLEHRGSRVRSMYVCAITTTIFFGIAVVVAIALGFTVFRPRDPNVAVYMVGLKDHSITDFVFAASNVSTAMIISINNGNYVGFKYDNATSLIRYNGMVV GEVRVEGKEVAARSQVNVTTTAVLMAPELMAKSVNEISSGKLNLTSSVTLHGRSTLLGVKVRASAHTECNMTLVLGEVLSGNSSCWSRLKIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54200			Late embryogenesis abundant (L...		Lus10031554 [exp]	0	1
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10021142 [exp]	1.7	1.0000
					Lus10036765 [exp]	2.4	1.0000
AT2G16190			unknown protein		Lus10011284 [exp]	3.0	1.0000
					Lus10006395 [exp]	4.0	1.0000
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10023568 [exp]	4.9	0.9794
AT3G55500		ATHEXPALPHA1.7,...	EXPANSIN 16, expansin A16 (.1)		Lus10014406 [exp]	5.0	0.9852
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10026165 [exp]	5.3	0.9791
					Lus10038080 [exp]	6.0	0.9712
					Lus10027005 [exp]	7.2	0.9644
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10003697 [exp]	7.4	0.9684

Compare expression of checked genes

Lus10031554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.