Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031558 [exp] 246 / 7e-83 ND 42 / 1e-04 Lus10031556 [exp] 232 / 2e-77 AT4G23610 42 / 1e-04 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031557 [exp] 215 / 9e-71 ND / Lus10039665 [exp] 124 / 2e-35 AT3G54200 52 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027177 [exp] 99 / 7e-26 AT2G46150 77 / 2e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039664 [exp] 97 / 6e-25 AT2G46150 74 / 3e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039662 [exp] 83 / 2e-19 AT4G23610 50 / 1e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10040941 [exp] 82 / 1e-18 AT3G54200 63 / 1e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031554 [exp] 77 / 4e-17 AT3G54200 64 / 1e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G025100 [exp] 65 / 8e-13 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G230400 [exp] 64 / 1e-12 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142300 [exp] 49 / 3e-07 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112800 [exp] 45 / 8e-06 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031555 pacid=23155967 polypeptide=Lus10031555 locus=Lus10031555.g ID=Lus10031555.BGIv1.0 annot-version=v1.0 ATGATGAGTACAATTCCTTCCAAATCGGTCGACAGTAGACCATGTCGAGCAATCGTGACGGTGAGTATACTCACCGTCGCTGCTGCTTCCGCTGTCCTTC TAGCTCTAACCCTGACCATTTTCCGACCGAAAGACCCCACTTTCACCATCTATCTGGTCGGCCTGCGTGGCTTGAACATCGGCTACTTACTCCACGCGGG AAACCTCACGAGGGGCATCGTCATAGGGGTCCGCAACGAAAACTACGGCAGCGTTTCGTGGCAGAATCTCACTGTGCTGGTCGAATTTCACGACAACTAT ACTCGGTGGCAGAGTACTACTCCTGTTGTCGTCGGCGAGATCCCAATCCCGGGGGGAATTGTGTCTCAACGCTCTACGGTGAACATCACGACCAATGTAA CCCTTCAACTAGACAAGCTGGAAGGCGATCTGCGCGGTGTGCTCGCGGACTTGCATGACGGAGGCCTGAATTTCACTTGCTCGGTGACTGCCTCCACGCA TATCAGACCGTTTAGCGTCTTGCCTCGGATTCGTGGCTCGATTTCGGCTGATTGTTTTGGTTCTCTGTACATCAATAAGCCCCCGGTGTCGAGCCATGAT GTCTTTGGTGGACGAGCATGGTGTTGGACCGTCGAGAAAAGAGTTATGTAG
AA sequence Show only first row Show all	>Lus10031555 pacid=23155967 polypeptide=Lus10031555 locus=Lus10031555.g ID=Lus10031555.BGIv1.0 annot-version=v1.0 MMSTIPSKSVDSRPCRAIVTVSILTVAAASAVLLALTLTIFRPKDPTFTIYLVGLRGLNIGYLLHAGNLTRGIVIGVRNENYGSVSWQNLTVLVEFHDNY TRWQSTTPVVVGEIPIPGGIVSQRSTVNITTNVTLQLDKLEGDLRGVLADLHDGGLNFTCSVTASTHIRPFSVLPRIRGSISADCFGSLYINKPPVSSHD VFGGRAWCWTVEKRVM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54200			Late embryogenesis abundant (L...		Lus10031555 [exp]	0	1
					Lus10019165 [exp]	1.0	0.9456
AT2G35740		ATINT3	nositol transporter 3 (.1)		Lus10017559 [exp]	1.4	0.9338
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10040166 [exp]	3.5	0.8968
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10035498 [exp]	3.5	0.9289
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10002212 [exp]	4.5	0.9154
AT2G28500	AS2	LBD11	LOB domain-containing protein ...		Lus10036130 [exp]	5.5	0.9131
					Lus10016134 [exp]	6.0	0.8869
AT5G10530			Concanavalin A-like lectin pro...		Lus10007073 [exp]	8.8	0.8852
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Lus10027870 [exp]	12.5	0.8557
AT1G34050			Ankyrin repeat family protein ...		Lus10024844 [exp]	12.5	0.8840

Compare expression of checked genes

Lus10031555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.