Gene [FLAX] | FIBexDB

Lus10031556 [FLAX]

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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10031558 [exp]	243 / 2e-81	ND	42 / 1e-04
Lus10031557 [exp]	212 / 2e-69	ND	/
Lus10031555 [exp]	203 / 4e-66	AT3G54200	39 / 0.001	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10039665 [exp]	98 / 6e-25	AT3G54200	52 / 2e-08	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10027177 [exp]	83 / 2e-19	AT2G46150	77 / 2e-17	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10039664 [exp]	79 / 6e-18	AT2G46150	74 / 3e-16	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10040941 [exp]	72 / 6e-15	AT3G54200	63 / 1e-11	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10039662 [exp]	67 / 2e-13	AT4G23610	50 / 1e-07	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10015120 [exp]	63 / 4e-12	AT2G46150	56 / 8e-10	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.011G025100 [exp]	51 / 9e-08	AT2G46150	77 / 3e-17	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Potri.016G142300 [exp]	49 / 4e-07	AT3G54200	162 / 3e-50	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Potri.002G230400 [exp]	48 / 1e-06	AT2G46150	82 / 3e-19	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Potri.006G112800 [exp]	46 / 4e-06	AT3G54200	159 / 7e-49	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)

PFAM info

Representative CDS sequence

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>Lus10031556 pacid=23155919 polypeptide=Lus10031556 locus=Lus10031556.g ID=Lus10031556.BGIv1.0 annot-version=v1.0

ATGAATGAGAGTACCATTCCTCCCAAATCGGTCGACGGACCATGCCGAACAACAACGACGAGGATAATGGTCACCGTCGCTGTTACTCTCGCCGTCCTCA

TAGTGGTGTTAATGCTAACCGTTTTCCGACCAAGAGACCCCACCTTCACCATCGACCTAGTCGGCCTACGCAGCCTTAACATCTCCCACTTTCTCCGCTC

GAAAAACATCACGAGGGATGTCATCATAGGGGTCCATAACGAAAACTACGGCAGCGTTTCGTGGCGGAACCTCACCGTGTTGGTCGAGTTGCAAGATGAC

AACCGTCAGTGGTGGCAGGGCGGTCACGTTCATCGTGGTTCAGTCGTCGGGGAGATCCCAATCCCGGGGGGAACCGTGTCTCAACGCTCGACTATGAACA

TCACGACCGGTGCAACCCTTCAACTAGACAAGCTGAGAGGCGATCTGCGGGATGTGCTCGTGGACTTGCAGTATGGAGGCGTGAATTTCACTTGCTCGGT

GACGGCCTTCGCAGATATCAGACCGTTTACCGTTTTGCCTCGGATTCGTGGCTCGATTTCGGTTGATTGTTTCGGTTCGGTGTACACGGAGAAGACTCCG

GTCCCCGGGATCGGTATCATCCCCGGTGTTGGTATCTTTGGTGGACATGCATGGTGCTGGACCGTCAAGAAGAGAGTTGTTATGTAG

AA sequence

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>Lus10031556 pacid=23155919 polypeptide=Lus10031556 locus=Lus10031556.g ID=Lus10031556.BGIv1.0 annot-version=v1.0

MNESTIPPKSVDGPCRTTTTRIMVTVAVTLAVLIVVLMLTVFRPRDPTFTIDLVGLRSLNISHFLRSKNITRDVIIGVHNENYGSVSWRNLTVLVELQDD

NRQWWQGGHVHRGSVVGEIPIPGGTVSQRSTMNITTGATLQLDKLRGDLRDVLVDLQYGGVNFTCSVTAFADIRPFTVLPRIRGSISVDCFGSVYTEKTP

VPGIGIIPGVGIFGGHAWCWTVKKRVVM

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23610			Late embryogenesis abundant (L...		Lus10031556 [exp]	0	1

Lus10031556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.