Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031556 [exp] 267 / 5e-91 AT4G23610 42 / 1e-04 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031557 [exp] 243 / 1e-81 ND / Lus10031555 [exp] 236 / 8e-79 AT3G54200 39 / 0.001 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039665 [exp] 105 / 7e-28 AT3G54200 52 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027177 [exp] 89 / 9e-22 AT2G46150 77 / 2e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039664 [exp] 86 / 2e-20 AT2G46150 74 / 3e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10040941 [exp] 77 / 8e-17 AT3G54200 63 / 1e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039662 [exp] 74 / 4e-16 AT4G23610 50 / 1e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10009831 [exp] 70 / 2e-14 AT3G54200 54 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G230400 [exp] 53 / 2e-08 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G025100 [exp] 52 / 5e-08 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142300 [exp] 42 / 9e-05 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031558 pacid=23155855 polypeptide=Lus10031558 locus=Lus10031558.g ID=Lus10031558.BGIv1.0 annot-version=v1.0 ATGAATGAGAGTACAATTTCTCCCAAATCGGTCGACAGACAGTGTCGAGCAATCGCGACGGGGATAATACTCACCGTCGTGGTTGCTTTGGCGGTCCTTA TAGCTCTAACCTTGACCGTATTCCGACCGAGAGACCCCACCTTCACCATCTACCCCGTTGGCCTGCACGGCCTCAACATCGCCGACATACTTCGCTCGAC AAACCTCACGAGTGGTGTCGTCGTAGGGGTCAGTAACGAAAACTACGGCAGCGTTTCGTGGCGGAATCTCACGGTGCTGGTCGAATTGCAGGATAACAAC AATCGGTGGTGGCAGGGTGGACACATTCGTGTTGCAGTCCTCGGCGAGATCACAATCCCGGGAGGAATTGTCTCTCAACGCTCTACTATGAACATTACGA CCAATGTAACCCTTCAACTGGACAAGATGAAAGCCGATCTGTGGGATGTGCTCTGGGGCTTGCAGAAAGGAGGTGTGAATTTCACTTGCTCGCTGACGGC CTTAGCAGATATTAGACCGTTTAGCGTCTTACCTCAAATCCGGGACTCGATTTCGGTTGATTGTTTTGGTTCTGTGTACGCCAATAAGTCTCCTGGCTCG GGCCATGGTGTCATTGGTGTCTTTGGAGGACAAGCGTGGTGCTGGACCGTCAAGAAAAGTATTGTTATGTAG
AA sequence Show only first row Show all	>Lus10031558 pacid=23155855 polypeptide=Lus10031558 locus=Lus10031558.g ID=Lus10031558.BGIv1.0 annot-version=v1.0 MNESTISPKSVDRQCRAIATGIILTVVVALAVLIALTLTVFRPRDPTFTIYPVGLHGLNIADILRSTNLTSGVVVGVSNENYGSVSWRNLTVLVELQDNN NRWWQGGHIRVAVLGEITIPGGIVSQRSTMNITTNVTLQLDKMKADLWDVLWGLQKGGVNFTCSLTALADIRPFSVLPQIRDSISVDCFGSVYANKSPGS GHGVIGVFGGQAWCWTVKKSIVM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10031558 [exp]	0	1
AT4G02210			unknown protein		Lus10008312 [exp]	1.0	0.9145
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10019748 [exp]	2.0	0.8661
					Lus10027564 [exp]	3.2	0.7858
AT3G13310			Chaperone DnaJ-domain superfam...		Lus10032957 [exp]	5.7	0.7410
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036868 [exp]	7.9	0.8150
					Lus10006063 [exp]	8.9	0.8127
AT3G26720			Glycosyl hydrolase family 38 p...		Lus10014259 [exp]	10.7	0.7156
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10026550 [exp]	11.7	0.7822
AT2G14378			Protein of unknown function (D...		Lus10019428 [exp]	12.2	0.6545
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10032836 [exp]	12.7	0.7710

Compare expression of checked genes

Lus10031558 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.