Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21700 311 / 2e-106 ATSGP2 Ras-related small GTP-binding family protein (.1.2.3) AT5G54840 245 / 1e-80 ATSGP1 Ras-related small GTP-binding family protein (.1.2) AT5G03530 63 / 1e-11 ATRABALPHA, AtRABC2a, AtRab18B ,ATRAB ALPHA ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) AT2G44610 61 / 6e-11 RAB6, AtRABH1b, AtRab6A Ras-related small GTP-binding family protein (.1) AT5G59150 58 / 8e-10 ATRAB-A2D, AtRABA2d ARABIDOPSIS RAB GTPASE HOMOLOG A2D, RAB GTPase homolog A2D (.1) AT3G07410 56 / 3e-09 AtRABA5b RAB GTPase homolog A5B (.1) AT1G07410 56 / 3e-09 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT1G09630 54 / 1e-08 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) AT3G15060 54 / 2e-08 AtRABA1g RAB GTPase homolog A1G (.1) AT5G45130 54 / 2e-08 ATRAB-F2A, RHA1, AtRab5A, AtRABF2a ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015119 [exp] 427 / 2e-152 AT3G21700 335 / 7e-116 Ras-related small GTP-binding family protein (.1.2.3) Lus10039670 [exp] 357 / 1e-124 AT3G21700 325 / 3e-112 Ras-related small GTP-binding family protein (.1.2.3) Lus10027172 [exp] 349 / 1e-121 AT3G21700 313 / 2e-107 Ras-related small GTP-binding family protein (.1.2.3) Lus10040044 [exp] 262 / 2e-87 AT5G54840 331 / 1e-114 Ras-related small GTP-binding family protein (.1.2) Lus10019615 [exp] 260 / 1e-86 AT5G54840 330 / 6e-114 Ras-related small GTP-binding family protein (.1.2) Lus10014409 [exp] 60 / 1e-10 AT5G03530 351 / 8e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10001026 [exp] 59 / 3e-10 AT1G07410 366 / 2e-130 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10043349 [exp] 59 / 3e-10 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10019501 [exp] 59 / 3e-10 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G152100 [exp] 320 / 2e-110 AT3G21700 315 / 2e-108 Ras-related small GTP-binding family protein (.1.2.3) Potri.011G136300 [exp] 293 / 9e-100 AT5G54840 370 / 5e-130 Ras-related small GTP-binding family protein (.1.2) Potri.001G420700 [exp] 291 / 1e-98 AT5G54840 363 / 2e-127 Ras-related small GTP-binding family protein (.1.2) Potri.002G135500 [exp] 61 / 8e-11 AT2G44610 385 / 3e-138 Ras-related small GTP-binding family protein (.1) Potri.003G086700 [exp] 61 / 9e-11 AT2G44610 397 / 4e-143 Ras-related small GTP-binding family protein (.1) Potri.006G121400 [exp] 60 / 2e-10 AT5G03530 335 / 2e-118 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.010G229600 [exp] 59 / 2e-10 AT5G03530 311 / 7e-109 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.016G097800 [exp] 58 / 6e-10 AT5G03530 349 / 5e-124 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.016G000400 [exp] 56 / 2e-09 AT1G07410 380 / 4e-136 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.008G032000 [exp] 56 / 3e-09 AT5G03530 290 / 1e-100 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF08477 [flax] [poplar] Roc Ras of Complex, Roc, domain of DAPkinase
Representative CDS sequence Show only first row Show all	>Lus10031559 pacid=23156047 polypeptide=Lus10031559 locus=Lus10031559.g ID=Lus10031559.BGIv1.0 annot-version=v1.0 ATGGGCCGATCGAAATCCAACGTGAGCCGGAAAATCCACCGCCGCCTGTCCATCCTCCGCCGCTGCATTCTCCGGGTATGGCGCCACATCATGATGTGCT CCATCGGAAAGCCCGTCAAGTACCGAATGCTATCCCTTCCTTCAATCCCCAAGCCCACCGCCGGAGAAATCGTAACCCCTCCTCCGCCGTCCTCCTCCTC CTCCGCCGCAGTTATTCAAAATTACAACGGAGGAAGGGTCAGTCGGGGCGATTCGGATTTGGTCGCGTTGAAGATTAGCCTCCTGGGTGATTCCCAGATT GGGAAAACAAGCTTCCTGGCGAATTTCGTCGGCGGCGTAGAAACAAACGGAGAAGAAATTACAGGGGGAGAAGAAGAAGAAGGGTTGAATCTGATGGATA AAGTATTGGAAGTCGGAGGAGCTCGGATTTCTTACAGCCTATGGGAAGTTGACGGCGGAGAGCAATCGAAGGAGCAGATTCCGGTGGCCTGTAAAGACTC GGTGGCGATCCTTATCATGTTCGATCTCACCAGTCGGGTCACTCTTAACGGGGTGATGAAATGGTACCAAGAGGCAAGGAAATGGAATCAGACGGCAATA CCAATTTTGATAGGAACAAAGTTCGACGACTTCATCCAGCTTCCAATTGATCTACAGTGGACAATTGCTAGCCAGGCGAGAGCGTACGCCAAGGCATTGA ACGCGACACTGTTCTTCTCGAGCGCAACGTACAACATCAATGTGAATAAGATCTTCAAGTTCGTAACAGCCAAGCTCTTCGATCTGCCATGGACCGTGGA GCGAAACCTCACCATCGGAGAGCCAATCATTGATTTCTGA
AA sequence Show only first row Show all	>Lus10031559 pacid=23156047 polypeptide=Lus10031559 locus=Lus10031559.g ID=Lus10031559.BGIv1.0 annot-version=v1.0 MGRSKSNVSRKIHRRLSILRRCILRVWRHIMMCSIGKPVKYRMLSLPSIPKPTAGEIVTPPPPSSSSSAAVIQNYNGGRVSRGDSDLVALKISLLGDSQI GKTSFLANFVGGVETNGEEITGGEEEEGLNLMDKVLEVGGARISYSLWEVDGGEQSKEQIPVACKDSVAILIMFDLTSRVTLNGVMKWYQEARKWNQTAI PILIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKIFKFVTAKLFDLPWTVERNLTIGEPIIDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Lus10031559 [exp]	0	1
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10034344 [exp]	16.4	0.7683
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10010999 [exp]	19.1	0.7643
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10015756 [exp]	26.8	0.7536
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10035662 [exp]	27.7	0.6923
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10017679 [exp]	32.8	0.7365
AT2G07180			Protein kinase superfamily pro...		Lus10040588 [exp]	38.4	0.7008
AT4G22900			Protein of unknown function (D...		Lus10014139 [exp]	44.0	0.6850
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10042053 [exp]	46.9	0.6804
AT1G16240		ATSYP51, SYP51	syntaxin of plants 51 (.1.2.3)		Lus10002446 [exp]	50.0	0.7160
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10011990 [exp]	63.3	0.7090

Compare expression of checked genes

Lus10031559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.