Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32400 951 / 0 ATGLR3.7, GLR5 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) AT1G05200 835 / 0 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT1G42540 826 / 0 ATGLR3.3 glutamate receptor 3.3 (.1) AT3G51480 795 / 0 ATGLR3.6 glutamate receptor 3.6 (.1) AT2G17260 782 / 0 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT4G35290 776 / 0 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT2G32390 775 / 0 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT5G11210 434 / 8e-139 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT2G29110 434 / 1e-137 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G29120 433 / 5e-137 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015118 [exp] 1750 / 0 AT2G32400 987 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10039672 [exp] 1390 / 0 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10027170 [exp] 1367 / 0 AT2G32400 970 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10027171 [exp] 883 / 0 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10039671 [exp] 870 / 0 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10012245 [exp] 840 / 0 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10035980 [exp] 784 / 0 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10026552 [exp] 753 / 0 AT4G35290 1025 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10013837 [exp] 747 / 0 AT4G35290 1016 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G229900 [exp] 1209 / 0 AT2G32400 955 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Potri.005G253800 [exp] 855 / 0 AT1G42540 1180 / 0.0 glutamate receptor 3.3 (.1) Potri.005G102700 [exp] 845 / 0 AT3G51480 1169 / 0.0 glutamate receptor 3.6 (.1) Potri.014G152200 [exp] 838 / 0 AT1G05200 1210 / 0.0 glutamate receptor 3.4 (.1.2) Potri.002G230000 [exp] 834 / 0 AT1G05200 1198 / 0.0 glutamate receptor 3.4 (.1.2) Potri.009G168300 [exp] 832 / 0 AT4G35290 1127 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Potri.002G007400 [exp] 827 / 0 AT1G42540 1178 / 0.0 glutamate receptor 3.3 (.1) Potri.005G102600 [exp] 770 / 0 AT3G51480 1012 / 0.0 glutamate receptor 3.6 (.1) Potri.018G012600 [exp] 484 / 3e-156 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G013200 [exp] 484 / 4e-156 AT2G29120 882 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [flax] [poplar] Periplas_BP PF01094 [flax] [poplar] ANF_receptor Receptor family ligand binding region CL0030 [flax] [poplar] Ion_channel PF00060 [flax] [poplar] Lig_chan Ligand-gated ion channel CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Lus10031560 pacid=23155907 polypeptide=Lus10031560 locus=Lus10031560.g ID=Lus10031560.BGIv1.0 annot-version=v1.0 ATGGAGCTGCTGGGGTGTATTATTCTCATGTGGGTATTAGTACTAGTAGTTGTTCTTGATTCTAGGTTGGTTTGCTGTCAGAGGCCTGCTTCAGTGAATA TTGGTGCCGTTTTCACTTTCGATTCTGTGATTGGGAGGGCTGCAAGGCCAGCCATAGCTGCTGCAGTCTCTGATGTTAATAAGGATTCTAGGGTTCTTAA TGGGACACAGCTCAACTTGATGATGGAGGATGCTAATTGCAGTGTTTTCTATGGCTCAGTTGTAGCTCTCCGCATGATAGAGAGACAAGTAGTAGCCATG ATCGGACCACAATCATCAGGAATAGCTCACATGGTTTCTCAAGTTGCAAACGGTCTACAAGTTCCTCTAATCTCATACGCCGCAACGGATCCAACTCTAT CAGCTCTCCAGTTCCCTTACTTCGTACGAACCACTCTAAGCGACTCTTATCAGATGGCCGCCCTGGCAGATTTGGTCGAATTCCACGGCTGGAAAGAGGT AATTGTGATCTTCACAGACAACGACCACGGCAGAAATGGCGTATCATCTTTAGAGGATCAGCTGAACCAAAGAATGATCAAAATCTTCTACAAGATGAGT TTAAGAGCCCGGTTCAACGACAATGATATCATGGATGTTCTGAACAATACCAAGCTACTAGGCCCCCGAGTCTACATCGTTCATTCCTATCAGGATCCTG ACTTGAGGATCTTCAAAATGGCTAAGAAGCTCGAAATGATGACCACGAATTTTGTCTGGCTCGCTACGGATTGGCTGGCGACCACATTGGACTCGTTCAC TCCTTTGCAGCGAGGATCGATGCTGAATCTCGTTCGAGGGGTTGTTGGCTTGCGTCAACATACGCCCAAGTCGACAAAGATGATATCTTTCATGTCTAGA TGGAAAGAAATGCAGAGAAAAGGGATGGCAGTCTCGGAGCTTAATGCGTACGGGTTTCAAGCTTACGATACGGTTTGGCTACTTGCGTACGCAATCGATA AGTTCATGAACGAAGCCAACAACTTCACCTTCTCCGCAAGAGAACGCCTTGTTGATACAGATAAGTCTGCATTCCAGCTCGGACAGCTTAAGATCTTTAA CGGCGGAACTGATCTCCGCAGGATTATATTGCAGACGAACTTTACCGGTGTAAGCGGTCATGTTCAATTCAATGCTGACCGGAACGTGTGGAACCGTGGC TATGACATCATCAATGTGAACAATAACTTGTCTGTTCATACAGTTGGATATTGGGGGAATACATCTGGGTTTCAACTTATACCCCCTGAGGATCGAAAAG GTGGAATCTTTTCTAGGGAAGAGATGAAGCTAAAGAGTGTGACATGGCCGGGAGGGAAGACGGAAAGGCCACGCGGTTGGGTGATCGCTAACAACGAAAG GCCGTTAAGGATTGGAGTTCCTAACAGAAGAAGCTTTGTTCAGTTTGTTACTGAAGAGACTAATAGCCATAAGGTTGAAGGGTACTGTATAGATGTGTTT CTTGAAGCTACGAAATTAGTGCCGTATGATGTCCCTTATACCCTCGTTCCTTTCGGAGATGGCCACTCGAATCCTGGTTACGACAACCTCGTAAACAAAG TTGCAGCAAATGTGTTTGATGCTGCAATAGGGGACATTGCGATCGTGACTAACCGGACAAAGATAGTCGATTTCTCGCAGCCATATGTGGCTACTGGTCT CGTGGTTGTAGCTCCTGTCAGAAGCTTGAAAGCAAATGCTTGGGTGTTTCTGAAACCGTTTACCGTGGAGATGTGGTGTGTTACTGCAGCTTCGTTTCTT GTTATAGCCGTGGTTATCTGGTTGCTTGAGCATCGTGTGAATGATGACTTCAGAGGTCCCCCGAAACGCCAAATTGTGACAATGCTCATGTTCAGCTTCA CTACACTTTTCAAGACGAACCAGGAAACAACTAAAAGTCCCCTAGGAAAGATGGTCATGGTGGTATGGCTTTTCTTACTGATGGTGGTAACTGCAAGCTA CACGGCCAGCCTGACTTCCATCCTCACGGTTCAGCAGCTTTTGTCTCCCATTACCGGAATCGACAGCTTGGTCTCGAGCAATTGGCCGGTTGGTTACCAA GTAGGCTCTTACGCGTATGGCTATCTCACAGAGTCTCTCCACATTTCTCCGTCGAGACTCAAGTCTCTACGCAACCCGGAAGAGTACGAGGCTGCGTTGA GGAAAGGGCCTAGCAACGGAGGAGTTGCAGCAATAGTAGATGAGCTTCCATATGTAGAATTGTTTCTTGCGAATCGGACCGATTTTGGAATCATTGGCCA AGCTTTCACCAGAGCTGGATGGGGATTCGCATTCCAGAAAGACTCTCCTCTCACGATCGACATCTCCACCGCCATCCTAAAGCTCTCCGAGAACGGACAG CTACAGAGCATCCACGACAGGTGGTTCTGCAGCAAAGGATGCCCCGGAGACCATCAGAGGCAAAGCGAGCCGAACCAACTCAACCTGATCAGCTTCTGGG GACTATACCTCCTCTGCGGTGTCGTCTCTTTAGCTGCATTGCTGATATACACGGTGCGAATGATCCGCCAATTTGCCATTTACAAACACAGACAGCTCCA GATTGCTTCCTCCCCATCAGCAGCCTCGACGACAACCACTACTACTCGGTGCTGCTGCGAAGTGGCCTACAACTTCTTCGAGTTTGTCGACAAGAAGGAA GAGGCCATCAAGAAGATGTTTAAAGAGTGCGAATTCGAACATCCTCAGCCGCAGACTATGGGCATGGAGAGGTAG
AA sequence Show only first row Show all	>Lus10031560 pacid=23155907 polypeptide=Lus10031560 locus=Lus10031560.g ID=Lus10031560.BGIv1.0 annot-version=v1.0 MELLGCIILMWVLVLVVVLDSRLVCCQRPASVNIGAVFTFDSVIGRAARPAIAAAVSDVNKDSRVLNGTQLNLMMEDANCSVFYGSVVALRMIERQVVAM IGPQSSGIAHMVSQVANGLQVPLISYAATDPTLSALQFPYFVRTTLSDSYQMAALADLVEFHGWKEVIVIFTDNDHGRNGVSSLEDQLNQRMIKIFYKMS LRARFNDNDIMDVLNNTKLLGPRVYIVHSYQDPDLRIFKMAKKLEMMTTNFVWLATDWLATTLDSFTPLQRGSMLNLVRGVVGLRQHTPKSTKMISFMSR WKEMQRKGMAVSELNAYGFQAYDTVWLLAYAIDKFMNEANNFTFSARERLVDTDKSAFQLGQLKIFNGGTDLRRIILQTNFTGVSGHVQFNADRNVWNRG YDIINVNNNLSVHTVGYWGNTSGFQLIPPEDRKGGIFSREEMKLKSVTWPGGKTERPRGWVIANNERPLRIGVPNRRSFVQFVTEETNSHKVEGYCIDVF LEATKLVPYDVPYTLVPFGDGHSNPGYDNLVNKVAANVFDAAIGDIAIVTNRTKIVDFSQPYVATGLVVVAPVRSLKANAWVFLKPFTVEMWCVTAASFL VIAVVIWLLEHRVNDDFRGPPKRQIVTMLMFSFTTLFKTNQETTKSPLGKMVMVVWLFLLMVVTASYTASLTSILTVQQLLSPITGIDSLVSSNWPVGYQ VGSYAYGYLTESLHISPSRLKSLRNPEEYEAALRKGPSNGGVAAIVDELPYVELFLANRTDFGIIGQAFTRAGWGFAFQKDSPLTIDISTAILKLSENGQ LQSIHDRWFCSKGCPGDHQRQSEPNQLNLISFWGLYLLCGVVSLAALLIYTVRMIRQFAIYKHRQLQIASSPSAASTTTTTTRCCCEVAYNFFEFVDKKE EAIKKMFKECEFEHPQPQTMGMER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10031560 [exp]	0	1
AT5G53140			Protein phosphatase 2C family ...		Lus10019012 [exp]	2.2	0.8685
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10031419 [exp]	3.5	0.8380
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10004745 [exp]	4.9	0.8383
AT4G03030			Galactose oxidase/kelch repeat...		Lus10024874 [exp]	5.1	0.8494
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Lus10037370 [exp]	7.0	0.8369
AT3G19553			Amino acid permease family pro...		Lus10040966 [exp]	7.1	0.8382
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10034399 [exp]	7.5	0.8178
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10036392 [exp]	8.2	0.8071
AT4G26850		VTC2	mannose-1-phosphate guanylyltr...		Lus10009725 [exp]	8.5	0.8349
AT4G11570			Haloacid dehalogenase-like hyd...		Lus10035494 [exp]	8.8	0.8255

Compare expression of checked genes

Lus10031560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.