Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05710 1635 / 0 ACO3 aconitase 3 (.1) AT4G35830 1550 / 0 ACO1 aconitase 1 (.1.2) AT4G26970 1521 / 0 ACO2 aconitase 2 (.1) AT5G54950 86 / 2e-20 Aconitase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015116 [exp] 1799 / 0 AT2G05710 1707 / 0.0 aconitase 3 (.1) Lus10027165 [exp] 1726 / 0 AT2G05710 1706 / 0.0 aconitase 3 (.1) Lus10039678 [exp] 1721 / 0 AT2G05710 1704 / 0.0 aconitase 3 (.1) Lus10028405 [exp] 1577 / 0 AT4G35830 1695 / 0.0 aconitase 1 (.1.2) Lus10041858 [exp] 1571 / 0 AT4G35830 1695 / 0.0 aconitase 1 (.1.2) Lus10040070 [exp] 1530 / 0 AT2G05710 1620 / 0.0 aconitase 3 (.1) Lus10021533 [exp] 1440 / 0 AT2G05710 1523 / 0.0 aconitase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G153400 [exp] 1667 / 0 AT2G05710 1695 / 0.0 aconitase 3 (.1) Potri.002G229200 [exp] 1645 / 0 AT2G05710 1674 / 0.0 aconitase 3 (.1) Potri.007G060900 [exp] 1571 / 0 AT4G35830 1658 / 0.0 aconitase 1 (.1.2) Potri.005G108100 [exp] 1567 / 0 AT4G35830 1668 / 0.0 aconitase 1 (.1.2) Potri.015G130201 [exp] 125 / 1e-33 AT4G35830 145 / 2e-41 aconitase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF00694 [flax] [poplar] Aconitase_C Aconitase C-terminal domain CL0364 [flax] [poplar] PF00330 [flax] [poplar] Aconitase Aconitase family (aconitate hydratase)
Representative CDS sequence Show only first row Show all	>Lus10031561 pacid=23156005 polypeptide=Lus10031561 locus=Lus10031561.g ID=Lus10031561.BGIv1.0 annot-version=v1.0 ATGGCTTCTGAACATCCTTTCAAGGAGATTTTCACTTCCCTCCCAAAGCCAGGTGGAGGAGAATTCGGAAAGTTCTACAGTCTGCCTGCACTTAACGATC CCCGTATTGAGAAGCTGCCCTATTCCATCAGGATTCTTTTGGAATCTGCCATTCGTAATTGTGACAACTTCCAAGTCACTAAAGAAGATGTTGAGAAGAT TGCTGACTGGGAAAATTCGTCCCCGAAACAAGTGGAGATCCCCTTCAAGCCTGCCCGTGTCCTCTTGCAGGATTTTACCGGAGTACCAGCTGTCGTTGAT CTTGCTTCTATGCGTGATGCAATGGGGAACCTTGGAGGTGATCAGAAGAAGATCAACCCGTTGGTCCCGGTTGATCTTGTAATTGATCATTCAGTTCAAG TTGACGTTACGAGATCAGAGAATGCTGTACAGGCTAATATGGAGCTTGAGTTTCAGAGGAACAAGGAGAGGTTTGCTTTCCTGAAATGGGGATCTACTGC TTTCGATAATATGCTGGTGGTTCCTCCTGGTTCTGGTATTGTACATCAGGTGAATCTCGAGTATCTTGGTCGGGTTGTATTCAACAAGGATGGTGTGATG TACCCTGACAGCGTGGTCGGGACTGATTCGCATACGACCATGATTGATGGATTGGGAGTTGCTGGCTGGGGAGTAGGAGGCATCGAAGCTGAGGCAGCAA TGTTGGGTCAGCCCATGAGCATGGTATTACCCGGTGTTGTTGGCTTCAAATTATCTGGAAAACTGCAGAATGGTGTGACTGCCACCGATCTGGTTCTGAC AGTAACTCAAATGCTGAGGAAACATGGTGTTGTCGGAAAATTTGTAGAATTTTATGGGGATGGAATGAGCAAGCTATCATTGGCTGATAGAGCGACTATA GCAAACATGTCTCCTGAATACGGTGCAACTATGGGGTTCTTCCCTGTCGATCATGTCACTCTTGATTATCTTAAACTGACGGGAAGGAGTGATGAAACTG TGTCAATGATCGAGTCATATCTTCGGGCAAATAAGATGTTCGTCGACTATAATGAGCGACAGATAGATAGAGTGTATTCATCATACCTTCAATTGGACCT TTCAGAGGTTGAGCCCTGTATTTCTGGACCCAAGAGACCTCATGATCGAGTTGCTCTTAGAGAGATGAAGTCAGACTGGCACTCTTGTCTTGATAGTAAA GTTGGATTCAAGGGATTTGCCATACCAAAAGAAGCACAGGGCAAAGTGGCTAAGTTCTCATTCCATGGGCAACCGGCTGAGCTCAAGCACGGCAGTGTCG TGATTGCTGCAATCACCAGTTGTACCAACACGTCCAACCCAAGCGTCATGCTCGGTGCTGGTCTTGTTGCCAAAAAGGCCTCTGAACTTGGGTTACATGT CAAGCCTTGGGTCAAAACAAGTCTAGCCCCAGGTTCCGGGGTGGTTACAAAATATTTGCTCAAGAGTGGGTTGCAAGAGTATCTGAACCATCAAGGTTTC AACATTGTTGGATATGGGTGCACGACATGTATCGGGAATTCTGGAGATATTGATGAATCCGTTGCTGCTGCTATTACAGAAAACGACATCGTGGCCTCGG CTGTGCTTTCTGGAAACAGAAACTTCGAGGGTCGTGTTCATCCATTGACAAGAGCGAATTACCTTGCTTCGCCACCTTTAGTGGTTGCTTATGCCCTTGC TGGCACAGTCGACATCGATTTCGACAAAGAGCCCATTGGAAAAGGCAAGGACGGCAAGGATGTGTATTTCAGGGATATCTGGCCGTCTACAGAGGAAGTT GCACAGGCTGTCCAATCCAGTGTGTTGCCCGAAATGTTTAGAAGTACATACGAGGCTATCACAAAGGGAAATCCCATGTGGAATCAGCTAACCGTACCGA CAGCATCCTCGTACTCGTGGGATCCCAACTCCACCTACATTCACGACCCTCCTTACTTCAAGAACATGACCCTCGATCCTCCCGGTGCTCATGGAGTTAA AGATGCCTACTGTCTACTGAATTTTGGAGACAGCATCACGACGGATCACATCTCACCGGCAGGAAGTATTCACAAGGACAGTCCGGCCGCCAAATTCCTC CTTGACCGAGGAGTTGACCGCAGGGACTTCAACTCTTACGGAAGTCGACGTGGGAATGATGAAATCATGGCGAGGGGAACCTTCGCTAACATCCGCCTTG TGAACAAGCTTTTGAATGGCGAAGTGGGTGCAAAGACGGTTCACATCCCCACCGGCGAGAAACTCTACGTCTTCGACGCTGCATCAAAATACAAGAATGA AGGACAGGACACTATCATTCTAGCTGGAGCAGAGTACGGAAGTGGAAGCTCCAGAGATTGGGCTGCCAAGGGTCCAATGCTATTGGGAGTGAAGGCAGTG ATTGCGAAGAGCTTTGAGAGGATCCACCGCAGCAACTTGGTGGGAATGGGAATAATCCCACTGTGCTTCAAGTCCGGCCAGGATGCAGACAGCCTAGGCT TGACTGGTCACGAACGGTTCGACCTTCCGAGCAACATCAGCGACATAAGGCCTGGCCAAGATGTAACCGTCACAACCGATAACGGGAAATCTTTCACCTG CACTGTCCGATTCGACACGGAGGTGGAGCTAGCTTACTTCAACCATGGAGGAATTCTACCGTATGTGATCCGCAACCTGATGAAGAAGCAGTGA
AA sequence Show only first row Show all	>Lus10031561 pacid=23156005 polypeptide=Lus10031561 locus=Lus10031561.g ID=Lus10031561.BGIv1.0 annot-version=v1.0 MASEHPFKEIFTSLPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVTKEDVEKIADWENSSPKQVEIPFKPARVLLQDFTGVPAVVD LASMRDAMGNLGGDQKKINPLVPVDLVIDHSVQVDVTRSENAVQANMELEFQRNKERFAFLKWGSTAFDNMLVVPPGSGIVHQVNLEYLGRVVFNKDGVM YPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLQNGVTATDLVLTVTQMLRKHGVVGKFVEFYGDGMSKLSLADRATI ANMSPEYGATMGFFPVDHVTLDYLKLTGRSDETVSMIESYLRANKMFVDYNERQIDRVYSSYLQLDLSEVEPCISGPKRPHDRVALREMKSDWHSCLDSK VGFKGFAIPKEAQGKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKASELGLHVKPWVKTSLAPGSGVVTKYLLKSGLQEYLNHQGF NIVGYGCTTCIGNSGDIDESVAAAITENDIVASAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGKGKDGKDVYFRDIWPSTEEV AQAVQSSVLPEMFRSTYEAITKGNPMWNQLTVPTASSYSWDPNSTYIHDPPYFKNMTLDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKFL LDRGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGAKTVHIPTGEKLYVFDAASKYKNEGQDTIILAGAEYGSGSSRDWAAKGPMLLGVKAV IAKSFERIHRSNLVGMGIIPLCFKSGQDADSLGLTGHERFDLPSNISDIRPGQDVTVTTDNGKSFTCTVRFDTEVELAYFNHGGILPYVIRNLMKKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05710		ACO3	aconitase 3 (.1)		Lus10031561 [exp]	0	1
AT2G29560		ENOC	cytosolic enolase (.1)		Lus10040711 [exp]	6.3	0.7331
AT3G52900			Family of unknown function (DU...		Lus10034160 [exp]	10.6	0.7292
AT1G71380		ATCEL3 ,ATGH9B3	ARABIDOPSIS THALIANA GLYCOSYL ...		Lus10025880 [exp]	15.9	0.7297
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10022785 [exp]	16.9	0.7593
AT2G36220			unknown protein		Lus10022709 [exp]	27.1	0.7155
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Lus10005352 [exp]	28.3	0.7191
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Lus10009419 [exp]	36.7	0.6980
AT3G18060			transducin family protein / WD...		Lus10038960 [exp]	48.0	0.7198
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10000620 [exp]	51.1	0.6554
AT5G42860			unknown protein		Lus10010231 [exp]	55.7	0.6864

Compare expression of checked genes

Lus10031561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.