Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05180 746 / 0 AXR1 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G32410 699 / 0 AXL1, AXL AXR1- like 1, AXR1-like (.1.2) AT3G25880 47 / 8e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G21470 49 / 7e-06 EMB2764, ATSAE2, SAE2 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) AT4G24940 45 / 9e-05 ATSAE1A, AT-SAE1-1, SAE1A SUMO-activating enzyme 1A (.1) AT2G30110 44 / 0.0002 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) AT5G06460 44 / 0.0004 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015115 [exp] 926 / 0 AT1G05180 860 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10017479 [exp] 50 / 5e-06 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10028804 [exp] 42 / 0.001 AT2G21470 855 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G153500 [exp] 792 / 0 AT1G05180 873 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.002G229100 [exp] 790 / 0 AT1G05180 884 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.009G120200 [exp] 48 / 1e-05 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.004G158900 [exp] 47 / 2e-05 AT2G21470 896 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.015G099000 [exp] 45 / 6e-05 AT4G24940 498 / 4e-179 SUMO-activating enzyme 1A (.1) Potri.012G100800 [exp] 44 / 0.0002 AT4G24940 490 / 4e-176 SUMO-activating enzyme 1A (.1) Potri.001G355800 [exp] 42 / 0.0007 AT5G55130 683 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00899 [flax] [poplar] ThiF ThiF family
Representative CDS sequence Show only first row Show all	>Lus10031562 pacid=23155824 polypeptide=Lus10031562 locus=Lus10031562.g ID=Lus10031562.BGIv1.0 annot-version=v1.0 ATGGATGATTTTAGGATATGGGGGGAGCAAGGACAGGCAGCATTGGAGAAAGCTAGCATATGCTTGCTTAACTGTGGTCCTACTGGTTCTGAGACATTGA AGAACCTTGTTCTTGGCGGAGTTGGATCTATCATAGTGGTTGATGGATCAAAAGTGGAACTTGGTGATCTTGGGAACAATTTCATGGTGGATGAATCGAG TGTGGGCCAATCGAAGGCAAAATGCGTGAGTGCTTTTCTTCAAGAGCTTAATGATGCTGTGAAGGCTAAGTTCATAGAAGAGTACCCAGAGGCTCTGATT GAGACGAATCCATCGTTCTTTTCTCAGTTCACTTTGGTAGTGGCCACTCAGCTTACTGAGGATTCTATGATTAAGCTCGATAAAATCTGTAGGGAGGCAA ATGTGATCTTGCTCTTTGCACGTTCTTATGGCCTTGCAGGGCTAGTTAGAATCAGCGTAAAGGAACATGTGGTTATCGAGTCAAAGCCCGATCATTTTCT AGATGACCTCAGATTGAATAATCCGTGGCCTGAACTTAAGAGTTTTGCAGAAACCATCGATTTGAATGTGACAGATCCTGTTGCCCATAAGCACACCCCT TATGTAGTCATTCTTGAGCGTCTCAGAGCCAAGATGGTATCAGCTGACGAGGAAAACTATAGAGAAGCCATGGATGCCTCGTTTAAAGTTTTCGCTCCCA GAGGAATCAATTCAGAATTGCGGCAGATCATCGATGATAGCTGTGCTGAAGTTAATTTCAGTTCATCTGACTTTTGGGTGATGGTGGCTGCATTAAAGGA GTTCATTATGAACGAAGGTGGGGGAGATATGCCACTTGAGGGTTCGATACCTGATATGACCTCTTCGACTGAGCTTTACGTAAATCTTCAGAAGATCTAC CAAGCAAAAGCGGAAGCTGATTTCCTTGTTATCGAAGAAAAGGTGAGGAGTATTTTAAAGAAAACAGGCCGTGACCCAGATAGCATCTCGAAGTCGGTGA TAAAAATTTTCTGTAAAAACGCGAGGAAGCTAAAGATTTGCAGGTATCGCCTTATCGAGGATGAGTTCAACAACCCTTCTTTATCGGAGCTGCAGAGGTA CCTTAGCAGTCCAGACTATAGCTACGCTGTGGGATTTTACATCTTGCTTCGAGCTGTGGATCGCTTTGCTGCAAACTACAAGGTTATTCCGGGTCAATAC GAGGGGGAAATTGACGAGGACATAGCTCGATTGAAATCTACCGCGGTCACCCTACTCAACGACCTGGGTTGCAATGCCTCGCCCTTGAACGATGACCTCG TCAGCGAAATGTGGCGGTATGCAGGTTCGGAGCTCCATGCTGTCGCTGCTTTCGTCGGGGGAGTTGCGTCGCAAGAAGTGATCAAGCTTATAACAAAGCA GTTTGTCCCCATGTCCGGCACGTTCATATTCAACGGCATTGATCACAAATCTCAATTACTATCGTTGTGA
AA sequence Show only first row Show all	>Lus10031562 pacid=23155824 polypeptide=Lus10031562 locus=Lus10031562.g ID=Lus10031562.BGIv1.0 annot-version=v1.0 MDDFRIWGEQGQAALEKASICLLNCGPTGSETLKNLVLGGVGSIIVVDGSKVELGDLGNNFMVDESSVGQSKAKCVSAFLQELNDAVKAKFIEEYPEALI ETNPSFFSQFTLVVATQLTEDSMIKLDKICREANVILLFARSYGLAGLVRISVKEHVVIESKPDHFLDDLRLNNPWPELKSFAETIDLNVTDPVAHKHTP YVVILERLRAKMVSADEENYREAMDASFKVFAPRGINSELRQIIDDSCAEVNFSSSDFWVMVAALKEFIMNEGGGDMPLEGSIPDMTSSTELYVNLQKIY QAKAEADFLVIEEKVRSILKKTGRDPDSISKSVIKIFCKNARKLKICRYRLIEDEFNNPSLSELQRYLSSPDYSYAVGFYILLRAVDRFAANYKVIPGQY EGEIDEDIARLKSTAVTLLNDLGCNASPLNDDLVSEMWRYAGSELHAVAAFVGGVASQEVIKLITKQFVPMSGTFIFNGIDHKSQLLSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10031562 [exp]	0	1
AT3G47630			unknown protein		Lus10023590 [exp]	1.7	0.8756
AT2G31970		ATRAD50, RAD50	DNA repair-recombination prote...		Lus10016644 [exp]	2.0	0.8739
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Lus10034734 [exp]	2.4	0.8704
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026892 [exp]	3.2	0.8604
AT3G14400		UBP25	ubiquitin-specific protease 25...		Lus10005591 [exp]	3.5	0.8766
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10038139 [exp]	4.5	0.8715
AT1G07990			SIT4 phosphatase-associated fa...		Lus10037400 [exp]	4.9	0.8655
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10033637 [exp]	5.3	0.8667
AT1G80190		PSF1	partner of SLD five 1 (.1)		Lus10025699 [exp]	6.9	0.8172
AT1G18030			Protein phosphatase 2C family ...		Lus10009642 [exp]	7.2	0.8938

Compare expression of checked genes

Lus10031562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.