Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32415 950 / 0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) AT1G54440 194 / 9e-52 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) AT5G35910 196 / 3e-51 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) AT2G25910 52 / 1e-06 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (.1.2) AT1G56310 47 / 0.0001 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G24340 46 / 0.0002 3'-5' exonuclease domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015114 [exp] 1416 / 0 AT2G32415 1089 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Lus10039170 [exp] 196 / 2e-51 AT5G35910 828 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10005691 [exp] 191 / 2e-49 AT5G35910 814 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10020293 [exp] 168 / 1e-42 AT5G35910 691 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10020300 [exp] 141 / 3e-34 AT5G35910 477 / 1e-157 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10010930 [exp] 46 / 0.0003 AT1G56310 640 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G229000 [exp] 983 / 0 AT2G32415 1050 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Potri.013G062800 [exp] 194 / 1e-50 AT5G35910 791 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Potri.019G038701 [exp] 190 / 2e-49 AT5G35910 846 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Potri.006G234000 [exp] 48 / 3e-05 AT2G25910 486 / 8e-174 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (.1.2) Potri.018G058900 [exp] 46 / 0.0001 AT2G25910 536 / 0.0 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (.1.2) Potri.015G009500 [exp] 46 / 0.0001 AT5G24340 679 / 0.0 3'-5' exonuclease domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0426 [flax] [poplar] HRDC-like PF00570 [flax] [poplar] HRDC HRDC domain CL0219 [flax] [poplar] RNase_H PF01612 [flax] [poplar] DNA_pol_A_exo1 3'-5' exonuclease
Representative CDS sequence Show only first row Show all	>Lus10031563 pacid=23156066 polypeptide=Lus10031563 locus=Lus10031563.g ID=Lus10031563.BGIv1.0 annot-version=v1.0 ATGGACGAAAGAAAGTACAGGATTAGCATCGCGGTGACGCTAATCTCCCTCGCGGCGGCGGCAGTGACTGTCGCCTTCACGGCGGCGCAGTACCGGCGAA GGAGGAAGGATAAGGAACGCTCTCGAAGTTCCTGCTACTTGCACGCCGAAGGAAAGCCTCAGTTCGGATTCAGGAAAGTCAACGCTGACAACTCCTTCTC TCAGTTCAAGCACTCGAAGACGAACAGCAGTGAATCGAGAAAAGCGGAGAATGGTTCCAATTTGCATCCGTATGAACAGGAGGTGAAGGCATTGGTGGAT AATCCTCCTGCCGAGTTTGAATTTGATGTTACTAGTTGGAGTAAGGAACTGAGCGACTCGTATGTTTGGATTGAGACTGAATCTCAGCTGAAGGAGCTAG CTGAGTTGCTGAGGAAGGAGAGAGTTTTTGGTGTTGATACGGAGCAACATAGCCTTCGTTCATTTCTTGGTTTCACTGCTCTAATCCAGATATCGACGGC AACCGAGGATTATCTGATTGATACGATTGCATTACATGATTCAATGGAAGTTCTAGGACCAGTTTTTTCTGATCCAAGCATATACAAGGTGTTCCATGGA GCAGACAATGACGTGCTTTGGCTGCAAAGAGACTTCCATATCTATGTGGTTAATTTGTTTGATACAGCAAAAGCTTGTGAGGTGTTGTCGAAGCCACAGA AATCGTTGGCATACTTGCTTGAAACCTATTGTGGAGTGTACTCGAACAAATTGCTACAGCGTGAAGACTGGAGATTTCGTCCCTTATCATTGGAGATGTT AGAGTATGCTCAGATGGATGCACACTATTTATTATATATAGCTCATTGTTTAATTGATGAGCTCAGACAGCAAGATGTAGATAACTCGCCTTCTCCAGAT GAAAAGCTGCAGTATGCTGAGGCCACTCGTCGTTCAAACATGATATGCATGCAACTATACACGAAGGAGATTGATCGTTATCCCGGGCAGGCAGCTGCAT CATCAATTCTTTTCCGTCACTTCAATATTCAAGAAGATTCATTAATTTCCAGCGAGACACAGGATCTTGTAAGACGTCTGTGCACTTGGAGAGAACTAAT GGCTCGTGTGCATGATGAGAGCTTAAGATACATCTTATCAGATCAAGCTATTGTGTCCTTAGCAGGAAAATTTCCAACAAATCTGACAGAACTCTCCCAG CTAATTGCCGATGCTGATAATCAAGTGGAACCAGTGAATTCCACTTCTTTTCTTCCTCTCTCAACTGTGGTCACGAGCCATTTAGATGATTTATTCGACG TCATCCGGGACACAGAAAGCAGTAGCCTTGATGATGTAATCTCTACAGTCCTCCAAAAGTGCCTTGGTGAAAACGGAAGCTGTCCGTTGTCTATCTATAA CTATGCTCTGCTTATGAACAGTGACTTCAAACTTACGAGTAGAACGGTATCCAAACAGAAAGGGGGTCGAAATCCAAAACAAGCACATAAGGCTTCACGA GCACGGCAGCATTTTGTTGAGAAGTTCTCCTGTAAAGCTCCGGTATATGACAACTGCAGGATATATGCAAACGATGGACGTTTGCTTTGCTATTGTGACC GCAGAAAGCTTGAATGGTATCTCCGTCGAGACTTAGCGAAGCTTGTTGACGAAGATCCTCCAGCCATTATTCTTCTTTTCGAGCCAAAGGGCCGTCCGGA GGATAAAGACAATGACTACATACAGAGTAAGAGGAATATATGCGTCAGCTGTGGTGAAGATGGCCACTATCTACGGTACCGAATAATCCCTTCATGCTAC AGAATACATTTCCCAGAGCATTTGAAGAGTCATCGTTCTCAGGATATCATCCTACTCTGCGTGGACTGTCATGAAGTAGCCCATGCTGCGGCCGAGAAGC ACAAGAGGAAAATCGCTGCTCAGTATGGTATTCCGTTGTTTGTTCGTAGAGTGGTGGATTTTAAAGAAGCCACAATCATACCACTACCAGAGCCAGCTTC TTCGTCGATAGGTCCTGCAAATGAGGCTGGTGTGTCTCCTTTGCAACTTCGTAGCGCTGCTATGGCTCTTCTTCGCCATGGGAAGAGCATGCCTTTGAAG CGACATGGTGAACTTATACAAATTGTTATGCAGTATTACGGAGGAAGAGAAGTATCGGAGGACGATTTGGAGAGAGCTTTGCTGGTTGGAATGAGCCCCC ATGAGAGAAGACGGTTTCGGAAGAAAAGGGGCATGCACTCAAAACCATCTCCTGGAAATTTGGAAGAGGATTCTTCGCTACAGAAGGATCAAAACAATCC CACAGAGAAAGAGACGAATCTCGAGAACACAAACCATGACGAGAGGGAAGAAGCTTCGTATACGCGAGAGGTTGTCAACGAAGACGAGGAAACTAATGGG ACAGGAGGAGATGGAACTTATTCTTCTAAGAACAACTCGAAACTATCTCTGCTAGGACATGGTCCCCACGGGAAACAGGTCGTGGAATACCTAATTAACG AGGAAGGAGAGGAGGGCATCCGCCAATTTTCCCAGACATGGAGACAAGTCTTCGTCGAAGCGCTCAACCCTCGCTTCTTGCCCTCTGGATGGACCGTGAT GTACAGGTATCTCTGTCGAGATTTAGCGAAGCTTGTAGACGAAGATCCTCCAGCCATTATGCTTCGTTTCGAGCCAAAGGACCGTCCAGAGGATGAAGAT AACGACTTCTACATCCAGAGTAAGGGGAATATATGCGTCAGCTGTGGTGAATGTGGCCACTATCTACGGTACCGAATAATCCCTTCATGCTACAGAATAC ATTTCCCTGAGCATTTGAATAGCCATCGTTCTCATGATATCGCCCTACTCTGCGTGGACTGTCATGAAGTAGCCCATGCCGCGGCCGAGAAGCACAAGAG AAAAATCGCTGCTCAATATGGTATTCCGTTGTTTGTTCGTAGAGTGATTGTCATGCAGTATTACGGAGGAAGAGAAGTGTTGGAGGACGATTTGGAGAGA GCTTTGCTGGTTGGAATGAGCCCCCATGAGAGAAGGGGGTTCCGGAAGAAAAGGGGTACGTCCACCACAAAGCAATCTCCTGGAAATTCGGAAGAGGGAC ACGGGCGATGCAATGGCGCTGTAAAGTGTAATGCTGCTGAGGTTTCTTCGAAAGATGAACCGGATCTTCTCCAGAAGGAGCAAAACAATCTGACAGAGAA AGAGACGTATCTCGAGAACGCAAACCATGATGAAAGGGAAGAAGCTTCTGTTACTAGAGAGGCTGTCAACAAAGACGAGGAAACTAATGGGACAGGAGGA GATGGAACCTATTCTTCTAAGAACAACTCGAAACCATCTCTCCTAGGACACGGTCCCCATGGAAAACAGGTCGTGGAGCACCTAATGAATGAGGACGGAG AGGATGGCATCCGCCAGTTCTGCCAGACGTGGAGACAAGTATTCGTCGAAGCGCTCAACCCTCGCTTCTTGCCCTCTGGATGGACCGTGATGCACAGCGG CAGAAGGGATTTCGGCGAGTTCAGTGTGTACAACCCTGCCAAGAAGGTTATACCTGATGATGCCTGA
AA sequence Show only first row Show all	>Lus10031563 pacid=23156066 polypeptide=Lus10031563 locus=Lus10031563.g ID=Lus10031563.BGIv1.0 annot-version=v1.0 MDERKYRISIAVTLISLAAAAVTVAFTAAQYRRRRKDKERSRSSCYLHAEGKPQFGFRKVNADNSFSQFKHSKTNSSESRKAENGSNLHPYEQEVKALVD NPPAEFEFDVTSWSKELSDSYVWIETESQLKELAELLRKERVFGVDTEQHSLRSFLGFTALIQISTATEDYLIDTIALHDSMEVLGPVFSDPSIYKVFHG ADNDVLWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVYSNKLLQREDWRFRPLSLEMLEYAQMDAHYLLYIAHCLIDELRQQDVDNSPSPD EKLQYAEATRRSNMICMQLYTKEIDRYPGQAAASSILFRHFNIQEDSLISSETQDLVRRLCTWRELMARVHDESLRYILSDQAIVSLAGKFPTNLTELSQ LIADADNQVEPVNSTSFLPLSTVVTSHLDDLFDVIRDTESSSLDDVISTVLQKCLGENGSCPLSIYNYALLMNSDFKLTSRTVSKQKGGRNPKQAHKASR ARQHFVEKFSCKAPVYDNCRIYANDGRLLCYCDRRKLEWYLRRDLAKLVDEDPPAIILLFEPKGRPEDKDNDYIQSKRNICVSCGEDGHYLRYRIIPSCY RIHFPEHLKSHRSQDIILLCVDCHEVAHAAAEKHKRKIAAQYGIPLFVRRVVDFKEATIIPLPEPASSSIGPANEAGVSPLQLRSAAMALLRHGKSMPLK RHGELIQIVMQYYGGREVSEDDLERALLVGMSPHERRRFRKKRGMHSKPSPGNLEEDSSLQKDQNNPTEKETNLENTNHDEREEASYTREVVNEDEETNG TGGDGTYSSKNNSKLSLLGHGPHGKQVVEYLINEEGEEGIRQFSQTWRQVFVEALNPRFLPSGWTVMYRYLCRDLAKLVDEDPPAIMLRFEPKDRPEDED NDFYIQSKGNICVSCGECGHYLRYRIIPSCYRIHFPEHLNSHRSHDIALLCVDCHEVAHAAAEKHKRKIAAQYGIPLFVRRVIVMQYYGGREVLEDDLER ALLVGMSPHERRGFRKKRGTSTTKQSPGNSEEGHGRCNGAVKCNAAEVSSKDEPDLLQKEQNNLTEKETYLENANHDEREEASVTREAVNKDEETNGTGG DGTYSSKNNSKPSLLGHGPHGKQVVEHLMNEDGEDGIRQFCQTWRQVFVEALNPRFLPSGWTVMHSGRRDFGEFSVYNPAKKVIPDDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32415			Polynucleotidyl transferase, r...		Lus10031563 [exp]	0	1
AT5G64500			Major facilitator superfamily ...		Lus10002935 [exp]	3.5	0.8844
AT4G03115			Mitochondrial substrate carrie...		Lus10024769 [exp]	6.6	0.8982
					Lus10003863 [exp]	10.1	0.8169
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10026441 [exp]	14.1	0.8784
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10009638 [exp]	14.3	0.8792
AT5G37290			ARM repeat superfamily protein...		Lus10008435 [exp]	16.6	0.8814
AT1G30140			unknown protein		Lus10024751 [exp]	18.3	0.8875
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10019962 [exp]	19.1	0.8695
AT1G61780			postsynaptic protein-related (...		Lus10002066 [exp]	19.3	0.8626
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	20.7	0.8841

Compare expression of checked genes

Lus10031563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.