Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09900 353 / 8e-115 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 252 / 5e-76 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G79080 205 / 7e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 203 / 1e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 200 / 1e-55 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 192 / 9e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 191 / 1e-52 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 189 / 1e-52 RPF2 rna processing factor 2 (.1) AT1G12620 189 / 1e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 184 / 6e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015113 [exp] 1030 / 0 AT1G09900 364 / 5e-119 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031566 [exp] 516 / 6e-179 AT1G09900 349 / 3e-113 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015110 [exp] 513 / 8e-178 AT1G09900 347 / 1e-112 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015111 [exp] 468 / 2e-160 AT1G09900 343 / 2e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10037012 [exp] 465 / 1e-158 AT1G09900 353 / 5e-115 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015109 [exp] 455 / 7e-155 AT1G09900 351 / 6e-114 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015108 [exp] 411 / 3e-137 AT1G09900 345 / 2e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015112 [exp] 407 / 2e-136 AT1G09900 327 / 6e-105 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031565 [exp] 361 / 1e-116 AT1G09900 335 / 4e-106 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G109500 [exp] 375 / 1e-123 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 249 / 3e-75 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G047000 [exp] 246 / 9e-74 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.011G144300 [exp] 221 / 2e-64 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G457300 [exp] 207 / 9e-60 AT1G79080 712 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 206 / 6e-58 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 204 / 1e-57 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034200 [exp] 189 / 1e-52 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 187 / 7e-52 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.003G154800 [exp] 186 / 3e-51 AT4G20090 816 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10031564 pacid=23156031 polypeptide=Lus10031564 locus=Lus10031564.g ID=Lus10031564.BGIv1.0 annot-version=v1.0 ATGGATTTTGTACTTCTTCAAGACTCGAACACCGTCAGAAATGGCGGCTTCGCCAGAGACGATTCAAGGATGAAGAAAAAGAAGGGCAAAGTTTGCTCGA GCGCGAGGAGTTCTTCTTCTCTATCCTTAAGAAGCCTCCGTCGAGTTTCTGCTGCCGTTCCTTCGAGTCTGGATTCCCCAGCTTACACTTCTTCCTCGCA CAAGCTAAGTCATGTTTTCACGAACCAGGTGAGCAATTCCCACTCGTCCGAGCGCGACAATCGTCTGTGGAAGTTAATTGTAGAAAAGCAGTTGGAGAAG GCATTCACGTATCTTAAGAAAAGGGTCGTCGTCTCTCGAGAAGAAATCTCCGATTTAGCTGCTTGCAGGCGGCTGATTGACGATCTGTGTAAAACACGAC GAACTAGAATGGCAGCTCAGGCAGTCGAGCTTTTAGAGGCAACGACAACACTTGATATTTCTACGTACACTGTATTGATTAAGGGGCTTTGTAAAGCAGG TGAGTTTGATGCTGCGTTGAAGCTCTTCCGCAGAATGGAAGAGGGATACTGTAGTTGTAAACCTGACGACTATACCTATGGCATGCTAATCAGTGCGATG TTTTCGAAACTCGGATCGGTGGAAGTGATGAAGTTCTTGGGTGGGATGATGAGTGAAGGATTCGAACCTGATGTCCTGACTCGTACTGCTGTAGTCAGCG GGTTGTGTAAAGAAGGTAGATTAGATGAAGCTGTAAAGTTGATGTCTTCTAATGGCTGGAATCCTTGTGTGGGATCTTACAATGTGGTCATGAGTGGCTT GTGTAAAGCTGGAAAGGTAAATGATGCTGAGAAGCTGTTAGCTGATATGGCTGCTCGGGGAGGCGATTGTTCGCCTTCTGCTGTTACTTTCAGGATGTTG ATTAGGACTCTATGCCTCAGGGGTTCATTCTACAAGGCAATGGCTTTGTTGGAGAGTATGAAGGTTAAGTATGGATGCACTCCCAATGCTTCTCATTATA TCCTCATTATCCATTCCTTGTGCAAGCTGAAGAAGTTGGGATTTGCGGTTGAGTATATCGAGGTAATGATATCCAGAGGATGTTATCCGAATATTTCCAT CTTTAATACTTTGTGTGCTTCATTGTGGATACACGGCAATGCGGATGCTGCTGTTGGCTTGTTTAATTTGTTGAAAGCTAGCAGAGGTTGCTGGCCGAAT GCAGTTAGTTACGAAATAGTGATTCAGGGGCTTTCTAGATTTCGGAAATCGGATCAAGCTCTGCGACTTCTACGCGAGATGCGTAGTGTGGATGAAGGGC TTGAGCCTACCGCACTCTCCTATGTCAGTCTGTTTGGTGGGCTTATTAGGGATGGGAAAGCTTACGCTGCGATCCAGATTTTGGACGAAATAGAGTCGTT CAAGGTGGAGGTGCCGTATAGTGCCTACAACATGATCATCAATGGGCTCTGCAGCATTGGGGAGACTGACCGTGCGATCGACTTGCTGGTGTTTATGTTT TCGAAGGGTTGTAGACCCATTCAATCTACGTATGCCGTCCTAATTGAAGGGTTGGCAAGGGGCGGACTAGGTAGGGAGGCCATGGAGTTGCTAAACGAGT TGTCCGTAAGTCGAATTATGGGCGATAGTTGGTCCAAGGGATTAGCAGCAAGGATAAAAACGATGTGCGGCTTGGAATAA
AA sequence Show only first row Show all	>Lus10031564 pacid=23156031 polypeptide=Lus10031564 locus=Lus10031564.g ID=Lus10031564.BGIv1.0 annot-version=v1.0 MDFVLLQDSNTVRNGGFARDDSRMKKKKGKVCSSARSSSSLSLRSLRRVSAAVPSSLDSPAYTSSSHKLSHVFTNQVSNSHSSERDNRLWKLIVEKQLEK AFTYLKKRVVVSREEISDLAACRRLIDDLCKTRRTRMAAQAVELLEATTTLDISTYTVLIKGLCKAGEFDAALKLFRRMEEGYCSCKPDDYTYGMLISAM FSKLGSVEVMKFLGGMMSEGFEPDVLTRTAVVSGLCKEGRLDEAVKLMSSNGWNPCVGSYNVVMSGLCKAGKVNDAEKLLADMAARGGDCSPSAVTFRML IRTLCLRGSFYKAMALLESMKVKYGCTPNASHYILIIHSLCKLKKLGFAVEYIEVMISRGCYPNISIFNTLCASLWIHGNADAAVGLFNLLKASRGCWPN AVSYEIVIQGLSRFRKSDQALRLLREMRSVDEGLEPTALSYVSLFGGLIRDGKAYAAIQILDEIESFKVEVPYSAYNMIINGLCSIGETDRAIDLLVFMF SKGCRPIQSTYAVLIEGLARGGLGREAMELLNELSVSRIMGDSWSKGLAARIKTMCGLE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031564 [exp]	0	1
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031565 [exp]	2.4	0.9342
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Lus10015317 [exp]	3.9	0.9279
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015108 [exp]	4.0	0.9233
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10006927 [exp]	4.2	0.9079
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Lus10041119 [exp]	4.7	0.9055
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015112 [exp]	4.7	0.9288
AT3G25410			Sodium Bile acid symporter fam...		Lus10038237 [exp]	5.0	0.9216
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Lus10018086 [exp]	5.7	0.8768
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Lus10003465 [exp]	9.8	0.8989
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10036601 [exp]	10.8	0.9006

Compare expression of checked genes

Lus10031564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.