Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09900 343 / 4e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 233 / 5e-69 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G79080 226 / 1e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 203 / 2e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 196 / 4e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 196 / 2e-54 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 188 / 3e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 186 / 2e-51 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 185 / 6e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 181 / 9e-50 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015110 [exp] 1025 / 0 AT1G09900 347 / 1e-112 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015111 [exp] 733 / 0 AT1G09900 343 / 2e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015113 [exp] 527 / 0 AT1G09900 364 / 5e-119 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031564 [exp] 520 / 2e-180 AT1G09900 358 / 6e-117 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015109 [exp] 438 / 3e-148 AT1G09900 351 / 6e-114 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10037012 [exp] 436 / 1e-147 AT1G09900 353 / 5e-115 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015112 [exp] 416 / 4e-140 AT1G09900 327 / 6e-105 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015108 [exp] 409 / 2e-136 AT1G09900 345 / 2e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031565 [exp] 382 / 1e-124 AT1G09900 335 / 4e-106 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G109500 [exp] 382 / 5e-126 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 247 / 2e-74 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.011G144300 [exp] 238 / 5e-71 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G457300 [exp] 232 / 1e-68 AT1G79080 712 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G047000 [exp] 230 / 5e-68 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046000 [exp] 201 / 2e-56 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034200 [exp] 190 / 6e-53 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 186 / 3e-51 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G013300 [exp] 187 / 6e-51 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034400 [exp] 184 / 1e-50 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10031566 pacid=23155908 polypeptide=Lus10031566 locus=Lus10031566.g ID=Lus10031566.BGIv1.0 annot-version=v1.0 ATGGATTTCGTAGTGCGCACCCACTACAAAGGTTTCTGCTTGGCTACAGTAAGAAATGGCGGTTTCCTTACAGACAAGGTGAATCAGAAGAAGAAAAGAG GTAAAGCTGGTTATTTTTCTTCTTCTTTTTCATCCTTAAGAAGCCGGCGAGTTACCGCTGTTCATTTGAGCTTGGAGACTCCAAGCCGGCGAGTTTCCAC GAATCAGGTGATGACCAATTACACTCCTTACTATTCTGATGCCAACAGGCGTCTCTGGATATTGGTTAAAAAGATGAAATGGGGGAAGGGATTCACGCAT CTTAAGAACATGGTCGTATCTCGAGGCGAACTTCCTGACTTGGCTGCATCAAGGCTCCTAATTGCAGAGCTGTGTAACAATGGGAAAACTAAGATGGCAG CTCAAGTAGTCGAGTTCTTAGAGTGGTCTCATGGGGAAACCCTTGATGATGTTCGTATCTACAACGAATTGATTTTGGGGGTTTGTAAATCAGGTCAGAT TGATGATGCGTTGAAGCTCTTCCGCAGAATGGAAGAGAAAGAGAAATGTTGCTGTAGCCCTGATGCATATACGTATAACATCCTGATCCATGCGATGCTG AAGCAACGGGGATTCGAGGAAGGGGTGAAGTTCTTGGACGATATGAGGAGGAGTAAAGGATTCGAACCTGATGCCGTTACTCGTGGCATTGTGGTTACTA GGTTGTGTAAAGAAGGGAGATTGGATGAAGCTGTTGAGTTGATACATTCCGATGGCTGGACCCCTTGTGTGGAATCTTACAATGCTGTCATTACTGGCTT CTGTGAAGCTGGAAGGTTGATGGATGCTGAGAAGCTCTTAGCTGACATGGCTGCTCGGGGAGATGATTGTAAACCTTCTGCTGTTACTTTCAGGATCTTG ATTAGCACTCTATGCCGAAAATTTTTGTCAAGTAAAGCAATCGAATTGCTCGAGAGTATGATGCCACTGTACGGATGCACTCCCGATCCGTCTCATTACA GGCTCATCATCCATTCCTTGTGCAAGGAGAAGAAACTGGGAATGGCAATGAAGTATATCGAGGTGATGATATCCCGAGGATGTTATCCGAACACTGCAAT TTTCAACACTTTGCTTGCGGCATTGTGGAAAGACGACAAGATCGATGCTGGTTACGAGCTGTTTCGCGAGTTAAAGTCTAGTCGATGCTGCTCAGCTAAT TTAGGTAGTTATAGTATAGTGATAAAGGGGCTTTCGGTAGTCGGGAGAGCGTACGAAGCTATGCAGCTTCTGGAGGAGATGTTCCGTGAAGGTTTTGTGC CCGATGAGCCCACCTACACCAAGCTGATTGCCGGGCTGATTAGGGAGGGGAGATTTTGCGACGATGTGATCGAGATTCTGGAGGAACTTGAAGCGGGGTT GCAGGTTGAGATGCCGTGTTTTAGCTATAATTGGTTCATCAAAGCGCTGTGCAGCGTTGGAGAGACTGATCGTGCGATCGACGTGCTTGTGTATATGGCT CTGAAGGGTTGTCATCCGACTCGAGCTTCGTACGCCAACGTGATTGAAGGGTTGGCGAGGTGTGGATTAGGTAGGGAGGCCGCGGAGTTGATGAGCGAGC TGTTCCAGAGAGGAGTCTTGGATAAATACTGGACTAGGGGAGTAACACAGAGGATAGACAGGATTTGCAGGTTGGACTAG
AA sequence Show only first row Show all	>Lus10031566 pacid=23155908 polypeptide=Lus10031566 locus=Lus10031566.g ID=Lus10031566.BGIv1.0 annot-version=v1.0 MDFVVRTHYKGFCLATVRNGGFLTDKVNQKKKRGKAGYFSSSFSSLRSRRVTAVHLSLETPSRRVSTNQVMTNYTPYYSDANRRLWILVKKMKWGKGFTH LKNMVVSRGELPDLAASRLLIAELCNNGKTKMAAQVVEFLEWSHGETLDDVRIYNELILGVCKSGQIDDALKLFRRMEEKEKCCCSPDAYTYNILIHAML KQRGFEEGVKFLDDMRRSKGFEPDAVTRGIVVTRLCKEGRLDEAVELIHSDGWTPCVESYNAVITGFCEAGRLMDAEKLLADMAARGDDCKPSAVTFRIL ISTLCRKFLSSKAIELLESMMPLYGCTPDPSHYRLIIHSLCKEKKLGMAMKYIEVMISRGCYPNTAIFNTLLAALWKDDKIDAGYELFRELKSSRCCSAN LGSYSIVIKGLSVVGRAYEAMQLLEEMFREGFVPDEPTYTKLIAGLIREGRFCDDVIEILEELEAGLQVEMPCFSYNWFIKALCSVGETDRAIDVLVYMA LKGCHPTRASYANVIEGLARCGLGREAAELMSELFQRGVLDKYWTRGVTQRIDRICRLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031566 [exp]	0	1
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Lus10010101 [exp]	2.4	0.9248
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Lus10017349 [exp]	2.8	0.9231
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10012019 [exp]	4.5	0.9336
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015110 [exp]	5.8	0.9340
AT4G36390			Methylthiotransferase (.1)		Lus10028344 [exp]	6.3	0.9063
AT2G40760			Rhodanese/Cell cycle control p...		Lus10034243 [exp]	7.6	0.8844
AT3G29290		EMB2076	embryo defective 2076, Pentatr...		Lus10018198 [exp]	8.0	0.8642
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10032109 [exp]	9.2	0.9199
AT4G26150	GATA	GATA22, CGA1, G...	GNC-LIKE, GATA TRANSCRIPTION F...		Lus10006000 [exp]	9.8	0.8980
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10002394 [exp]	13.0	0.9147

Compare expression of checked genes

Lus10031566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.