Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05170 563 / 0 Galactosyltransferase family protein (.1.2) AT2G32430 536 / 0 Galactosyltransferase family protein (.1) AT4G26940 497 / 5e-176 Galactosyltransferase family protein (.1.2) AT1G32930 449 / 2e-157 Galactosyltransferase family protein (.1) AT1G11730 446 / 2e-156 Galactosyltransferase family protein (.1) AT1G77810 435 / 4e-152 Galactosyltransferase family protein (.1.2) AT1G33430 414 / 2e-143 Galactosyltransferase family protein (.1.2) AT1G22015 401 / 2e-138 DD46 Galactosyltransferase family protein (.1) AT5G53340 228 / 2e-71 Galactosyltransferase family protein (.1.2) AT4G32120 207 / 2e-63 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015107 [exp] 631 / 0 AT1G05170 639 / 0.0 Galactosyltransferase family protein (.1.2) Lus10027185 [exp] 577 / 0 AT1G05170 624 / 0.0 Galactosyltransferase family protein (.1.2) Lus10039657 [exp] 555 / 0 AT1G05170 607 / 0.0 Galactosyltransferase family protein (.1.2) Lus10040062 [exp] 535 / 0 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10021538 [exp] 495 / 2e-175 AT1G05170 610 / 0.0 Galactosyltransferase family protein (.1.2) Lus10020042 [exp] 458 / 2e-161 AT1G05170 503 / 2e-179 Galactosyltransferase family protein (.1.2) Lus10033248 [exp] 459 / 3e-161 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10008282 [exp] 456 / 6e-160 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1) Lus10006933 [exp] 448 / 9e-157 AT1G77810 602 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G153700 [exp] 585 / 0 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G228900 [exp] 559 / 0 AT1G05170 673 / 0.0 Galactosyltransferase family protein (.1.2) Potri.004G013900 [exp] 483 / 1e-170 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G004200 [exp] 475 / 1e-167 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.001G450200 [exp] 456 / 4e-160 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.011G151400 [exp] 454 / 2e-159 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1) Potri.002G089800 [exp] 444 / 2e-155 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.005G171400 [exp] 437 / 2e-152 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.019G067300 [exp] 413 / 2e-142 AT1G33430 560 / 0.0 Galactosyltransferase family protein (.1.2) Potri.003G136000 [exp] 244 / 8e-78 AT5G53340 484 / 3e-173 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10031567 pacid=23156010 polypeptide=Lus10031567 locus=Lus10031567.g ID=Lus10031567.BGIv1.0 annot-version=v1.0 ATGTCGTTCAAGTGGAGAACAGAGCAGCAGCAGTATTCTCCCAGTAAGAGCTCTTCTTCTGTATCTCAGAAATGGACTGTTTTGCTCTGCCTGCTCTGCT TCTGCGCTGGATTGCTCTTCACCGACAGGCTTTGGTCCGTACCGGAACGGCAGGGTCTTCTAACAAGGACAACTTCAATGGAAGCTGAGAAACTCAAGTT GATCTCTGAGGGTTGTGGCTCTATTCTAACTGTAGGCTCATCATCTTCATCCTCTTCAAAACCCGAGACATTAGACAAGACTATATCAACCTTGGAGATG GAGCTAGCTGCAGCAAAGGCAGTTCAAGAATCTATAGTCAATGGATCTCCCAAATCCAAGGACCCGACGAAGAAAAAGACGATTTTGCCCTCCTCCTCTT CCTCGTCGAGGAAGAGGAAACACTTGATGGTGGTCGGGATCAATACTGCCTTTAGTAGCCGGAGGAGAAGAGACTCGGTCCGTTCCACTTGGATGCCACA AGGTGACAAGAGGAAGAAACTCGAAGACGAGAAGGGCATCATCATCCGTTTCGTCATCGGTCACAGTGCTACATCAGGAGGCATATTGGATAGAGCCATT GAAGCAGAAGATAGAAAACATGGGGATTTTTTAAGACTGGATCATGTTGAAGGTTACTTGGAATTGTCAGCAAAGACAAAGATCTACTTTGCTACTGCTA TTGCTATGTGGGATGCAGATTTCTATGTCAAAGTTGACGATGATGTCCATGTTAATATCGCAACACTTGGAGAAACCCTAGTTAGACACAGGAAGAAACC AAGAGTGTACATTGGATGCATGAAGTCTGGCCCTGTCCTTAACCAAAAGGGAGTGAGGTACCATGAGCCAGAGTACTGGAAATTCGGCGAAGCAGGGAAC AAGTACTTCCGCCACGCCACAGGGCAACTCTATGCAATTTCGCACGATTTAGCTTCGTATATTTCAGTAAACCAGAATGTCCTCCACAAGTTTGCTAATG AAGATGTCTCATTGGGGTCGTGGTTCATCGGCCTCAATATCGATCACATTGACGATCGTAGATTATGTTGTGGGACTCCACCCGATTGTGAGTGGAAGGC TCAAGCCGGAAATGTGTGTGTGGCTTCATTCGACTGGAGCTGCAGCGGGATCTGCAGATCGGCTGATCGGATCAGGGAAGTCCATAAAAGGTGTGGGGAA GGACAAAATGCTATATGGACTGCTAAATTTTGA
AA sequence Show only first row Show all	>Lus10031567 pacid=23156010 polypeptide=Lus10031567 locus=Lus10031567.g ID=Lus10031567.BGIv1.0 annot-version=v1.0 MSFKWRTEQQQYSPSKSSSSVSQKWTVLLCLLCFCAGLLFTDRLWSVPERQGLLTRTTSMEAEKLKLISEGCGSILTVGSSSSSSSKPETLDKTISTLEM ELAAAKAVQESIVNGSPKSKDPTKKKTILPSSSSSSRKRKHLMVVGINTAFSSRRRRDSVRSTWMPQGDKRKKLEDEKGIIIRFVIGHSATSGGILDRAI EAEDRKHGDFLRLDHVEGYLELSAKTKIYFATAIAMWDADFYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGN KYFRHATGQLYAISHDLASYISVNQNVLHKFANEDVSLGSWFIGLNIDHIDDRRLCCGTPPDCEWKAQAGNVCVASFDWSCSGICRSADRIREVHKRCGE GQNAIWTAKF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05170			Galactosyltransferase family p...		Lus10031567 [exp]	0	1
AT5G39380			Plant calmodulin-binding prote...		Lus10030701 [exp]	1.4	0.8778
AT2G40480			Plant protein of unknown funct...		Lus10034211 [exp]	2.0	0.8929
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10026066 [exp]	4.0	0.8705
AT5G17910			unknown protein		Lus10009544 [exp]	4.6	0.8768
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038755 [exp]	6.3	0.8323
AT2G47500			P-loop nucleoside triphosphate...		Lus10009851 [exp]	11.0	0.8473
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10004263 [exp]	12.2	0.8436
					Lus10020368 [exp]	13.0	0.8369
AT5G52882			P-loop containing nucleoside t...		Lus10027551 [exp]	13.0	0.7704
AT3G17350			unknown protein		Lus10043098 [exp]	14.8	0.7774

Compare expression of checked genes

Lus10031567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.