Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16570 221 / 2e-67 UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014357 [exp] 353 / 7e-118 AT1G16570 662 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10026065 [exp] 340 / 7e-113 AT1G16570 646 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G394300 [exp] 266 / 2e-84 AT1G16570 617 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031569 pacid=23155864 polypeptide=Lus10031569 locus=Lus10031569.g ID=Lus10031569.BGIv1.0 annot-version=v1.0 ATGATCGGCAACAACAAGAGAGGCAGGGCTTGTGTGGTTGTGTTAGGAGACATTGGCCGCAGTCCTAGAATGCAATATCATGCCGTTTCTCTTGCAAATC AGACAAATTTTGAAGCTGACATTGTTGGATATGGAGGTTCCACACCACATGCTGCATTAGTGGAGCACAATTCTATCCACGTCTACAGAATGAAGCCGAT ACTGCTTCAGGGCCTGCCAAAGGTTCTTAAACCTTTGGTTCTTCTACTTAAGCCTTTGATCCAGTTCGTTATGTTACTTTGGTATCTCTGCATCAAAATA GAACGACCGGATATTTTCCTGGTTCAGAATCCACCATCGGTTCCTACCTTGATGGCAGTGAAATGGTTGTTTTGCAGGTTGGATAAAAGTATCACTCATC CTCCTGGAATCCGAGATTGCGTCAGCGTTGAAAAATCAGAATTAGAAGATGAGACTATATTTGCCATAGTGACTGAAGGCCATATTATTCCTAAACCAAA TCGACTTGCAGTTGTTGTTAGCAGTAGAAGCTGGACACCTGATGAAGATTTTGGTATTCTGTTGGAAGCTGCTGTTATGTATGACAGACGGGTTACCGCA ATCTTGAATGAAAATGATCATGTTGACGTAGAAGTTCTAGGGAAGGAAATATCCGGCGGAAAAGAGATTATCTACCCCAGACTATTGTTTGTGATTACAG GTAAAGGGCCTGAGAAGGAAAAATATGAAGAGAAGATAAAGCGCTTGAGACTGAAGCATGTTGCATTTCGTACAATGTGGTTGTCAGCTGAGGATTATCC TCTTCTCCTTGGTTCTGCTGATCTCGGTGTGTGCTTGCACACCTCGTCATCAGGGTTGGATCTTCCGATGAAGATGTTGTTTGAAGGGTTCCCTGGCAAA TGCAACACATTGGCTTCTTTGAGAAATGGGGCAATGGAAGCAGGGTCTTCAAGATGGGTTTCTGAATGGGAGGAACATGCTAAGCCACTAATACAGCAGC CTTTAGATCGATCTGAAGGCCGAGGGCTGACGACGTCATTGGTGCCGAAAGCACGGAAGAATATTCAAAATGGTTGTAATAGTAACAAAACATTGCAACT TGCTCATCAAACCTTAAACTTTGGGTACTTCGACAAGATATATATCCCGCCACCATACAATCATGGAGTCAAGCTCAATGGCATCCTCGTTTCGCAATTA CCGCAACTTCCGTTTAAAAAAGGATCGCGTGTATCTTGA
AA sequence Show only first row Show all	>Lus10031569 pacid=23155864 polypeptide=Lus10031569 locus=Lus10031569.g ID=Lus10031569.BGIv1.0 annot-version=v1.0 MIGNNKRGRACVVVLGDIGRSPRMQYHAVSLANQTNFEADIVGYGGSTPHAALVEHNSIHVYRMKPILLQGLPKVLKPLVLLLKPLIQFVMLLWYLCIKI ERPDIFLVQNPPSVPTLMAVKWLFCRLDKSITHPPGIRDCVSVEKSELEDETIFAIVTEGHIIPKPNRLAVVVSSRSWTPDEDFGILLEAAVMYDRRVTA ILNENDHVDVEVLGKEISGGKEIIYPRLLFVITGKGPEKEKYEEKIKRLRLKHVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKMLFEGFPGK CNTLASLRNGAMEAGSSRWVSEWEEHAKPLIQQPLDRSEGRGLTTSLVPKARKNIQNGCNSNKTLQLAHQTLNFGYFDKIYIPPPYNHGVKLNGILVSQL PQLPFKKGSRVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16570			UDP-Glycosyltransferase superf...		Lus10031569 [exp]	0	1
AT2G22600			RNA-binding KH domain-containi...		Lus10002662 [exp]	2.4	0.8199
AT1G17665			unknown protein		Lus10006153 [exp]	3.5	0.8009
AT1G18720			Protein of unknown function (D...		Lus10021661 [exp]	3.6	0.8217
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10035444 [exp]	4.2	0.8146
AT3G55080			SET domain-containing protein ...		Lus10040345 [exp]	6.5	0.7870
AT5G43460			HR-like lesion-inducing protei...		Lus10041152 [exp]	7.7	0.8033
					Lus10038470 [exp]	8.1	0.7571
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10010978 [exp]	8.4	0.8010
AT5G17660			tRNA (guanine-N-7) methyltrans...		Lus10015923 [exp]	10.2	0.7343
AT1G69450			Early-responsive to dehydratio...		Lus10036791 [exp]	13.3	0.7783

Compare expression of checked genes

Lus10031569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.