Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31480 1625 / 0 Coatomer, beta subunit (.1.2) AT4G31490 1618 / 0 Coatomer, beta subunit (.1) AT4G23460 71 / 2e-12 Adaptin family protein (.1) AT4G11380 67 / 7e-11 Adaptin family protein (.1.2) AT5G11490 44 / 0.0005 adaptin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015105 [exp] 1897 / 0 AT4G31480 1650 / 0.0 Coatomer, beta subunit (.1.2) Lus10039684 [exp] 1800 / 0 AT4G31480 1670 / 0.0 Coatomer, beta subunit (.1.2) Lus10027159 [exp] 1493 / 0 AT4G31480 1377 / 0.0 Coatomer, beta subunit (.1.2) Lus10027160 [exp] 251 / 2e-78 AT4G31490 237 / 3e-74 Coatomer, beta subunit (.1) Lus10028775 [exp] 78 / 3e-14 AT4G23460 1556 / 0.0 Adaptin family protein (.1) Lus10024654 [exp] 71 / 3e-12 AT4G23460 1560 / 0.0 Adaptin family protein (.1) Lus10032286 [exp] 71 / 4e-12 AT4G23460 1567 / 0.0 Adaptin family protein (.1) Lus10017508 [exp] 71 / 4e-12 AT4G23460 1565 / 0.0 Adaptin family protein (.1) Lus10022125 [exp] 48 / 4e-05 AT5G11490 1337 / 0.0 adaptin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G273300 [exp] 1708 / 0 AT4G31480 1657 / 0.0 Coatomer, beta subunit (.1.2) Potri.018G007400 [exp] 1702 / 0 AT4G31480 1672 / 0.0 Coatomer, beta subunit (.1.2) Potri.001G101400 [exp] 79 / 1e-14 AT4G23460 1486 / 0.0 Adaptin family protein (.1) Potri.003G130400 [exp] 73 / 8e-13 AT4G23460 1471 / 0.0 Adaptin family protein (.1) Potri.012G055000 [exp] 48 / 3e-05 AT1G48760 815 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.016G104700 [exp] 47 / 7e-05 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.006G092800 [exp] 46 / 0.0001 AT1G60070 1356 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.015G045600 [exp] 44 / 0.0006 AT1G48760 870 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region CL0159 [flax] [poplar] E-set PF07718 [flax] [poplar] Coatamer_beta_C Coatomer beta C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10031570 pacid=23155897 polypeptide=Lus10031570 locus=Lus10031570.g ID=Lus10031570.BGIv1.0 annot-version=v1.0 ATGGAGAAATCATGTTCCCTGCTTGTCCACTTCGACAAAGGAAACCCCGCAATTGCGAATGAGATAAAAGAAGCTCTAGAAGGGAATGATGTTGCTGCCA AGATTGATGCAATGAAGAACGCCATCAGTCTTCTATTGAATGGAGAAAACTTACCTCAGCTTTTCATCACAATTCTGAGGTATGTAATTCCTTCTGAGGA TCACACCATACAGAAGCTACTGCTGTTCTATTTGGAGATCATTGACAAGAAAGATGCTTCTGGAAAGCTTCTTCCGGAGATGATATTGATATGCCAGAAT CTGAGAAACAACCTTCAACACCCAAATGAGTACATTCGTGGAGTGACTTTAAGATTTCTTTGTCGTCTGCACGAGGCAGAGATAATTGAGCCGTTGATCC CTTCGGTGCTGCAAAATCTGGAGCATCGACACCCTTTTATCAGGAGGAATGCTATTTTCACGGTGATGTCCATATATAAGCTTCCCCAAGGGGACCAGCT TCTGGTTGATGCTCCTGAAATGATTGAGAAGGCTCTTTCCACGGAACATGATCCATCTGCGAAACGGAATGCATTCCTGATGCTCTTCACTTGTGACCAG GATCGAGCTATCAACTATCTTTTCAGCCATATTGATAAGATCTCTGAATGGGGTGAGCAGCTCCAGATGGTTGTTCTGGAGTTGATTCGTAAAGTGTGTA GAACAAACAAGGGAGAGAAGGGGAAATACATTAAAATCATAATGTCCTTGTTGGAATCTCCTTCCAGTGCCGTGGTTTATGATTGTGCTTCCACACTTGT TTCTCTGTCATCTGCACCTACAGCTATTAAAGCTTCTGCTAACACATACGGGCAGCTTCTTCTGTCTCAGAGTGATAACAATGTGAAGCTCATTGTTCTT GATCGATTGCTTGAGCTTAAGTCTTCTCACAGGGAAATCATGGTTGATATGGTCATGGATGTGCTCAGGGCTCTATCGAGTCCCAACCTTGATATACGCC GGAAGACCCTTGATATTGTCCTTGACTTGATCACTGCGAGGAATGTGAATGAAATTGTTCAGATGTTGAAAAAGGAAGTTGTTAAGACCCAGGGTGGAGA GCTTGAGAAGAATGGTGAGTACAGGCAGATGCTTATCCAAGCCATTCATTCTTGTGCTGTAAAGTTCCCGGAGGTGGCAAGCACAGTGGTTCACTTGTTG ATGGATTTCCTAGGAGATAGCAACATTGCTTCTGCTATAGATGTGGTTATTTTCGTTCGCGAAATAATCGAGACCAATCCTAAACTCAGAGTTTCGATAA TAACAAGGCTGTTGGATACTTTTTATCAGATCCGAGCTGCTAGGGTTTGCTCTGCTGCTCTTTGGATTATTGGAGAGTATTGTTTTTCCCTTTCAGAAGT TGAGAGTGGTTTAGCAACGATCAAGCAGTGTCTTGGGGAATTGCCGTTTTTCTCAGTTTCCGAGGAAGGCGAAGTTACTGATACTGCTTCCAAAAAGACT TCTCAACCAAGTTCAATGACTGTCTCTTCAAGAAGACCTGCTATCCTCTCGGACGGAACCTATGCGACACAAAATGCGGCCTCTGAAACTGTATTTTCAG CTCCTACTGTAGTTCAAGGTTCACTGTCCTCCGGAAACTTGAGATCCCTTCTTCTCACTGGCGATTTCTTCCTTGCTGCAGTTGTTGCATGCACTCTGAC AAAACTTGTTCTCAGATTGGAAGAGGTGCAGGTCTCTAAGGTGGAGGCCAACAAAGCAGCCACTCAGGCTTTGTTGATAATGGTCTCCATGCTGCAATTA GGGCAATCCTCTGTACTGCCTCATCCAATTGACAGTGACTCATATGATAGAATTCTTCTCTGCATAAGATTGATAAGTAATACAGGCGATGACATCCGGA AGATATGGTTGCAGTCTTGCCGTCAAAGTTTTGTGAAAATGCTATCAGAAAAGCAATTGAGAGAGATTGAAGAATTGAAGGCAATGGCTCAGGTTTCTCA TGCACAACCAGACGATCTTATCGACTTCTATCATTTGAAGAGCAGGAAGGGTATGAGTCAGCTCGAGTTGGAAGACGAAGTACAGGATGATTTAAAACGT GCGACGGGAGAGTTTGTCAACGATGGCAATGACGCAAACAAGCTTAACCGCATCCTTCAACTCACTGGATTCAGTGACCCTGTGTATGCCGAGGCATATG TCACGGTTAATCACTACGACATTGTACTTGATGTCACTGTCATCAACCGGACAAAGGAAACTCTCCAAAACTTATGCTTGGAGTTGGCCACTATGGGAGA CCTTAAACTCGTCGAGCGTCCTCAGAATTATGCTTTGGCCCCTGAGTCGAGCAAGCAGATAAAGGCCAACATCAAGGTCTCCTCAACCGAGACTGGCGTT GTCTTTGGTAACATTGTTTATGAGACATCAAATGTGATGGAACGGAACGTTGTTGTCCTCAACGATATCCACATCGATATCATGGACTATATTTCTCCTG CGTCTTGCTCCGATGCTGCGTTTAGAACCATGTGGGCAGAGTTTGAATGGGAAAACAAGGTTGCCGTGAACACAACGATTCAGAACGAGAAGGAATTCCT CAACCACATCATCAAGTCAACTAACATGAAATGCCTCACAGCACCGTCTGCCCTGGACGGAGAGTGCGGATTCCTAGCTGCGAACCTCTACGCCAGGAGC GTGTTCGGTGAAGATGCCTTGGTTAATGTAAGCCTCGAGAAGCAAGGAGACGGAAAACTCAGCGGATACATCAGGATCCGGAGCAAGACTCAGGGAATCG CTCTCAGTTTGGGAGATAAAATTACCTTGAAGCAGAAGGGAGGAAGTTGA
AA sequence Show only first row Show all	>Lus10031570 pacid=23155897 polypeptide=Lus10031570 locus=Lus10031570.g ID=Lus10031570.BGIv1.0 annot-version=v1.0 MEKSCSLLVHFDKGNPAIANEIKEALEGNDVAAKIDAMKNAISLLLNGENLPQLFITILRYVIPSEDHTIQKLLLFYLEIIDKKDASGKLLPEMILICQN LRNNLQHPNEYIRGVTLRFLCRLHEAEIIEPLIPSVLQNLEHRHPFIRRNAIFTVMSIYKLPQGDQLLVDAPEMIEKALSTEHDPSAKRNAFLMLFTCDQ DRAINYLFSHIDKISEWGEQLQMVVLELIRKVCRTNKGEKGKYIKIIMSLLESPSSAVVYDCASTLVSLSSAPTAIKASANTYGQLLLSQSDNNVKLIVL DRLLELKSSHREIMVDMVMDVLRALSSPNLDIRRKTLDIVLDLITARNVNEIVQMLKKEVVKTQGGELEKNGEYRQMLIQAIHSCAVKFPEVASTVVHLL MDFLGDSNIASAIDVVIFVREIIETNPKLRVSIITRLLDTFYQIRAARVCSAALWIIGEYCFSLSEVESGLATIKQCLGELPFFSVSEEGEVTDTASKKT SQPSSMTVSSRRPAILSDGTYATQNAASETVFSAPTVVQGSLSSGNLRSLLLTGDFFLAAVVACTLTKLVLRLEEVQVSKVEANKAATQALLIMVSMLQL GQSSVLPHPIDSDSYDRILLCIRLISNTGDDIRKIWLQSCRQSFVKMLSEKQLREIEELKAMAQVSHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKR ATGEFVNDGNDANKLNRILQLTGFSDPVYAEAYVTVNHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYALAPESSKQIKANIKVSSTETGV VFGNIVYETSNVMERNVVVLNDIHIDIMDYISPASCSDAAFRTMWAEFEWENKVAVNTTIQNEKEFLNHIIKSTNMKCLTAPSALDGECGFLAANLYARS VFGEDALVNVSLEKQGDGKLSGYIRIRSKTQGIALSLGDKITLKQKGGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10031570 [exp]	0	1
AT2G21390			Coatomer, alpha subunit (.1)		Lus10025780 [exp]	1.0	0.9770
AT5G11040		AtTRS120	TRS120 (.1)		Lus10013164 [exp]	1.7	0.9563
AT3G60860			SEC7-like guanine nucleotide e...		Lus10009300 [exp]	2.4	0.9654
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10027159 [exp]	4.0	0.9530
AT5G22780			Adaptor protein complex AP-2, ...		Lus10005371 [exp]	4.2	0.9442
AT5G16300			Vps51/Vps67 family (components...		Lus10041337 [exp]	5.5	0.9297
AT3G08530			Clathrin, heavy chain (.1)		Lus10028976 [exp]	5.9	0.9525
AT4G32640			Sec23/Sec24 protein transport ...		Lus10004122 [exp]	7.4	0.9292
AT5G53480			ARM repeat superfamily protein...		Lus10008864 [exp]	7.5	0.9142
AT2G46520			cellular apoptosis susceptibil...		Lus10030241 [exp]	8.7	0.9176

Compare expression of checked genes

Lus10031570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.