Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05270 365 / 3e-126 TraB family protein (.1) AT2G32340 315 / 2e-106 TraB family protein (.1) AT5G52030 76 / 3e-15 TraB family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015104 [exp] 553 / 0 AT1G05270 447 / 4e-158 TraB family protein (.1) Lus10038420 [exp] 352 / 3e-120 AT1G05270 371 / 6e-127 TraB family protein (.1) Lus10023387 [exp] 236 / 8e-74 AT3G16780 343 / 1e-116 Ribosomal protein L19e family protein (.1) Lus10038884 [exp] 87 / 5e-19 AT5G52030 458 / 3e-161 TraB family protein (.1.2) Lus10015005 [exp] 84 / 1e-17 AT5G52030 461 / 5e-156 TraB family protein (.1.2) Lus10038419 [exp] 77 / 3e-16 AT1G05270 68 / 3e-13 TraB family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G121900 [exp] 393 / 1e-136 AT1G05270 404 / 7e-140 TraB family protein (.1) Potri.017G038500 [exp] 388 / 1e-135 AT1G05270 417 / 1e-146 TraB family protein (.1) Potri.007G121800 [exp] 281 / 3e-93 AT1G05270 323 / 6e-109 TraB family protein (.1) Potri.012G133900 [exp] 89 / 6e-20 AT5G52030 426 / 7e-149 TraB family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0572 [flax] [poplar] TIKI PF01963 [flax] [poplar] TraB TraB family
Representative CDS sequence Show only first row Show all	>Lus10031571 pacid=23155854 polypeptide=Lus10031571 locus=Lus10031571.g ID=Lus10031571.BGIv1.0 annot-version=v1.0 ATGGACCCAGCACTGCCGGAATCCACGGAGGCGCCGCCACGAGAGGGTGAGGACTTCATCCACGTCGAAAACCCCGATCCGATGAGCGACAGCATCGTCA ATGTCGCCGATGAGCTGAGGAATGACGACGGCGACGCCGTCGAGGGAGGAGGAGGAGAAGAAGTAGAAGAAGTGGCGACGAATGAGACTGTGGAGAGGAG TGCAGAACCTCCTGAGGAGCTCTCCAAGACTGTGGTGCTGAATTGTGAGTCCAAGGCTGAATCTGGCTCCTGCGATGTCTACTTGGTCGGCACCGCTCAT GTATCAGAGGAATCATGCAGGGAAGTTGAAGCTATCATCCGATATTTGAAACCAGAGGTGGTCTTTCTGGAGTTGTGCCCTAGTCGTGTGACCGTTCTTA CACCTCAGAACTTAAAGGTGCCGACCATGGGAGAAATGGTGGAGATGTGGAAAAAGAAACACAACTTGTTTGGGATTTTATATAGCTGGTTCCTTGCTAG GGTTGCTAGTAAGCTTGAGGTACTTCCTGGGGCTGAGTTTCGTGTGGCTTACGAAGAAGCAAAGAAGTATGGTGGAAGAGTGGTACTTGGTGATCGTCCT GTTCAGCTCAAGGAGATGGATGATGCTGACATGCTGACTCTTGTGATCCAAGAAATGAGCAAGGACTACCCTACGCTTATGGAAACGCTAGTACACGAGC GAGATCAGTACATGTCGTCCATGCTACTTAGACACGCCAGCGAGAAATCCTCAGTTGTGGCAGTAGTTGGGAGAGGGCATCTTCGAGGAATTCAGAAGCA TTGGAAGCAGCCCGTATCGATCGATGAGCTCATGGAAATTCCGAAGCCGAAAGCAGCAGTTTCAGCATTGAAGATCATTACCTCCCTGGGTTTGGCAGCT GCTGGTGTGGCCATTGTTTCGGGAATTTACCTTTCCCGCAAGAAATAG
AA sequence Show only first row Show all	>Lus10031571 pacid=23155854 polypeptide=Lus10031571 locus=Lus10031571.g ID=Lus10031571.BGIv1.0 annot-version=v1.0 MDPALPESTEAPPREGEDFIHVENPDPMSDSIVNVADELRNDDGDAVEGGGGEEVEEVATNETVERSAEPPEELSKTVVLNCESKAESGSCDVYLVGTAH VSEESCREVEAIIRYLKPEVVFLELCPSRVTVLTPQNLKVPTMGEMVEMWKKKHNLFGILYSWFLARVASKLEVLPGAEFRVAYEEAKKYGGRVVLGDRP VQLKEMDDADMLTLVIQEMSKDYPTLMETLVHERDQYMSSMLLRHASEKSSVVAVVGRGHLRGIQKHWKQPVSIDELMEIPKPKAAVSALKIITSLGLAA AGVAIVSGIYLSRKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05270			TraB family protein (.1)		Lus10031571 [exp]	0	1
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10038582 [exp]	2.0	0.8152
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10006987 [exp]	12.3	0.6499
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10037188 [exp]	13.7	0.6857
AT4G11680			Zinc finger, C3HC4 type (RING ...		Lus10006313 [exp]	20.4	0.7189
AT1G03140			splicing factor Prp18 family p...		Lus10042599 [exp]	20.6	0.7149
AT1G24480			S-adenosyl-L-methionine-depend...		Lus10006247 [exp]	20.9	0.7104
AT3G53030		SRPK4	ser/arg-rich protein kinase 4 ...		Lus10005364 [exp]	22.8	0.7065
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10037882 [exp]	23.7	0.7272
AT4G02350		SEC15B	exocyst complex component sec1...		Lus10009856 [exp]	27.5	0.6427
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Lus10018412 [exp]	28.8	0.6591

Compare expression of checked genes

Lus10031571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.