Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21810 176 / 2e-50 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015103 [exp] 584 / 0 AT3G21810 170 / 2e-48 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G121700 [exp] 226 / 1e-69 AT3G21810 187 / 2e-54 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031572 pacid=23156051 polypeptide=Lus10031572 locus=Lus10031572.g ID=Lus10031572.BGIv1.0 annot-version=v1.0 ATGGTCGAAGGAAAACTGTTCAAGACGAAGTTATGTATACTGTATCAAAAAGGTCACTGTCATCGCCAGAATTGTTCGTTTGCTCATGGAAGCGCTGAGC TCCGTCACGTTGGTGACTCTTTCGACGGTAGGCGGAACAATCATGGTGGTGACCTAAGGGATAAGCTTGACAAGAGGCTTTCTCCAGAGAGAAGGTATTC TCTGGAGGAAGATTCAAGAGGCCGGCGAAAGTTCCGTGGGTCTAGCAATTCCAGATCACCTGAGAGAAACGGTGATAGGAAGCGAAGGAGAAAACATCAG TTTGATGTCCAGGGTGATTTAAAAGTCCCAGATGGAGTAGAAGATCAAGCGAGGAAACAGAAAGTTACGTCTGAGTCAAGACTAGCTCTTGAGAAGCAGT TCAAAGAAGTGCAGACAGATATTGACTTACTTGAGCGAGACAGATCTCGATTGAAGAGTCTCGTGGAGCAGAAAGTTGAAGAAGTAGATATTCTTAATTC TAGAATTCAGGAACTTGAGTCTCAGCTTTCCAAAGAGAAAGAAGTTTGTAAAAGATCCCAAGCCCGATTGCAAAGGTTGGGAAATCAGCTTGGGTCTTGT TTGTCAGGAACCGAAGGCAATGAAGAGTATTCAAGCATCAATATTGTTAGTGACGGTGAGAACTCTAATCATGGGAATATCAAGAGAAACGAAGTCCAGA ACTTTTCCTCATTGAGCATGAAAAGTTTGCCTAAAAAATGGGACATGGTTAATGACCTACGCCTAGGAACTCCAGCGAACAGTGGAGCTTACCATGCCGA GACTTCTAAACTTGACAACCTTCCAAATGCACCTGTTCGGATGATTCTCAGCAAGGACGGTGAAGCTGTTCACAGCGGGGATAATGGTCATGGACAGCAT GGAAGTAGTGGCAAGCAAAAGGGAGGGAAGGGTTCTTCTTTCAGCACACCCACTTCAGATAAGCAAAAGGGCACGGGTCCCACTTCATCCATACCACTTA CCAGCATTGTTGCCCATACATTTGATGAAGAAGGCGACGAGGAAGTTGAGGTGGTCGAGAACGTCTCGGCAGCCCTTAACAGCAGAGGATTCTCTGTTCT ACCCAGGAGGAGGTTCCCCTTCTTGCCCCCTCCCCTTCCTTCGCTCCCAAGAAACCATTATTTTCAGTACAAGGGTAACGACGAGAATGTCGACGTGGAC AATGAGATGGACGAGGTGGACATAGTTTGA
AA sequence Show only first row Show all	>Lus10031572 pacid=23156051 polypeptide=Lus10031572 locus=Lus10031572.g ID=Lus10031572.BGIv1.0 annot-version=v1.0 MVEGKLFKTKLCILYQKGHCHRQNCSFAHGSAELRHVGDSFDGRRNNHGGDLRDKLDKRLSPERRYSLEEDSRGRRKFRGSSNSRSPERNGDRKRRRKHQ FDVQGDLKVPDGVEDQARKQKVTSESRLALEKQFKEVQTDIDLLERDRSRLKSLVEQKVEEVDILNSRIQELESQLSKEKEVCKRSQARLQRLGNQLGSC LSGTEGNEEYSSINIVSDGENSNHGNIKRNEVQNFSSLSMKSLPKKWDMVNDLRLGTPANSGAYHAETSKLDNLPNAPVRMILSKDGEAVHSGDNGHGQH GSSGKQKGGKGSSFSTPTSDKQKGTGPTSSIPLTSIVAHTFDEEGDEEVEVVENVSAALNSRGFSVLPRRRFPFLPPPLPSLPRNHYFQYKGNDENVDVD NEMDEVDIV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10031572 [exp]	0	1
AT4G27340			Met-10+ like family protein (....		Lus10037871 [exp]	1.0	0.8684
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10037233 [exp]	1.4	0.8327
AT1G77610			EamA-like transporter family p...		Lus10018189 [exp]	3.7	0.7629
AT4G24900			unknown protein		Lus10022913 [exp]	6.6	0.7704
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Lus10037673 [exp]	13.7	0.8028
AT1G78930			Mitochondrial transcription te...		Lus10035714 [exp]	14.4	0.7412
					Lus10024463 [exp]	14.9	0.7569
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Lus10042068 [exp]	16.3	0.7469
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10003676 [exp]	16.7	0.7465
AT3G46100		ATHRS1	Histidyl-tRNA synthetase 1 (.1...		Lus10023925 [exp]	20.8	0.7335

Compare expression of checked genes

Lus10031572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.