Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21820 602 / 0 SDG36, ATXR2 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) AT2G17900 57 / 2e-08 ASHR1, SDG37 ASH1-related 1, SET domain group 37 (.1) AT1G26760 56 / 3e-08 SDG35, ATXR1 SET domain protein 35 (.1) AT2G19640 52 / 6e-07 SDG39, ASHR2 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) AT5G06620 44 / 0.0002 SDG38, ATXR4 SET domain protein 38 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015102 [exp] 909 / 0 AT3G21820 613 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Lus10037155 [exp] 55 / 9e-08 AT1G26760 573 / 0.0 SET domain protein 35 (.1) Lus10026687 [exp] 54 / 2e-07 AT2G19640 400 / 3e-138 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Lus10004628 [exp] 52 / 4e-07 AT2G19640 399 / 4e-138 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Lus10029712 [exp] 51 / 1e-06 AT2G17900 615 / 0.0 ASH1-related 1, SET domain group 37 (.1) Lus10013535 [exp] 45 / 9e-05 AT5G06620 367 / 2e-127 SET domain protein 38 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G038700 [exp] 619 / 0 AT3G21820 645 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Potri.008G089500 [exp] 59 / 4e-09 AT1G26760 646 / 0.0 SET domain protein 35 (.1) Potri.001G071700 [exp] 53 / 2e-07 AT2G19640 416 / 2e-144 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Potri.005G173100 [exp] 50 / 2e-06 AT2G17900 657 / 0.0 ASH1-related 1, SET domain group 37 (.1) Potri.006G196566 [exp] 44 / 6e-05 AT5G06620 229 / 2e-75 SET domain protein 38 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain CL0175 [flax] [poplar] TRASH PF01753 [flax] [poplar] zf-MYND MYND finger
Representative CDS sequence Show only first row Show all	>Lus10031573 pacid=23155945 polypeptide=Lus10031573 locus=Lus10031573.g ID=Lus10031573.BGIv1.0 annot-version=v1.0 ATGGATACGATAATCTGTCCAATCGATGCCAGCTGTTGGGAGCAAGTTGCAGTTCTTCTCCGGCCGCCGTCTCATCAGCAAGAGTATTTTGACGAGCTTC TATCTACAAGGCAATGCCATGGCGTGAAGGTTGTGGAAAAGGGAATTCATGGCAAAGGTGTATGTGCTGATATGGACTTTGAAGAAGGGGAGCTTGTCTT TAAAGACCAAATGCTTGTTGGTATTCAGCATTCTTCCAACAAGATTGATTGTATGGTGTGTGGCTTTTGCTTCCGATACATTGGCTCCATAGAACTCCAA GTAGGGAGGAAACTCTATCTACAAAGTCTGGGCGTCTCCACAAGTGCTGAATGTGCTGTGGGGATGACATCACACAATTCGAAGAAAGCTCGCCATGGTG ATGCTGATGTTGGAGGATGCACTTCCAGCAGTTCAAAGGCTACAGCAGCTCGTCTGCCGAAGGGACTTGTGGAATCATTAATGAATGGCACACTGATCTT GCCTCACTCTGATAAGTTCCCTTTGCCTTCAACCGTCTCCTGTGCTGGAGGTTGCGGGGAAGCTTACTACTGCAGCACGTCATGTGCAGAGGCGGACTGG ACATCTTCTCATTCGTTGCTTTGTACTGGGAAGCGGTCAGAAGCACTATCTACAGATGCCCTTTTGAAGTTTGCTCAGCACGCCAATGAGACGAATGATA TTTTCCTTTTGGCCGCAAAGACAATTGCCTTCTCCATTTTAAGGTATAGGAAGCTGAGAGCAGGTTGCTTGGAACAGAAGGAACCTGGATCAACTGCCTG GGATTTACTCTTGGAGGCGTGGAAGCCAGTATCGATTGCCTACAAGAAGACGTGGTGGGACTCCATCTCGTTGCCTGACGATGTCTCTGATGAAACTGCA TTTAGGATGGAAGTGAAGGAGCTTGCATTTACGTCACTTCAACTCCTGAAGAAAGCAATTTTCGACAAGGAATGTGAACCACTATTTTCGCTCGAGATTT ATGGGAATATTGTCGGCATGTTTGAGCTTAATAATCTTGACCTTGTCGTGGCATCACCAGTCGAAGACTACTTCCTGTATATTGACGATCTTCCGAAAGC TGAAAAGAATGAAGCAGAAAGAATCACGGAACCACTTCTGGATGCTCTTGGTGAAGAGTATTCCGTTTGTTGTGAAGGGACAGCATTCTATCCAATCCAA AGCTGTATGAATCACTCATGTCGCCCCAATGCACGAGCCTTCAAACGAGATGAGGACCGGGATGGAGTGGCAACGATTCTCGCCAATAGAGCCATTAGCA AAGGAGAAGAGATTACCATTTCGTACGTAGAGGAAGAGGCTCCGTTGGCAGAGAGACGAGTTTTGTTGGCGGATTATGGTTTTGAGTGCCAATGTGATAG GTGCCTGGAAGAAGAAGATGAAGAAGATAATGAACAAGCGGAAGAAGAAGATGAAGAAGAAACCTCATAA
AA sequence Show only first row Show all	>Lus10031573 pacid=23155945 polypeptide=Lus10031573 locus=Lus10031573.g ID=Lus10031573.BGIv1.0 annot-version=v1.0 MDTIICPIDASCWEQVAVLLRPPSHQQEYFDELLSTRQCHGVKVVEKGIHGKGVCADMDFEEGELVFKDQMLVGIQHSSNKIDCMVCGFCFRYIGSIELQ VGRKLYLQSLGVSTSAECAVGMTSHNSKKARHGDADVGGCTSSSSKATAARLPKGLVESLMNGTLILPHSDKFPLPSTVSCAGGCGEAYYCSTSCAEADW TSSHSLLCTGKRSEALSTDALLKFAQHANETNDIFLLAAKTIAFSILRYRKLRAGCLEQKEPGSTAWDLLLEAWKPVSIAYKKTWWDSISLPDDVSDETA FRMEVKELAFTSLQLLKKAIFDKECEPLFSLEIYGNIVGMFELNNLDLVVASPVEDYFLYIDDLPKAEKNEAERITEPLLDALGEEYSVCCEGTAFYPIQ SCMNHSCRPNARAFKRDEDRDGVATILANRAISKGEEITISYVEEEAPLAERRVLLADYGFECQCDRCLEEEDEEDNEQAEEEDEEETS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10031573 [exp]	0	1
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Lus10037326 [exp]	5.5	0.7977
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002905 [exp]	9.7	0.7955
AT1G52620			Pentatricopeptide repeat (PPR)...		Lus10026791 [exp]	10.2	0.7222
AT1G16570			UDP-Glycosyltransferase superf...		Lus10026065 [exp]	13.7	0.7789
AT4G35140			Transducin/WD40 repeat-like su...		Lus10023993 [exp]	15.5	0.7553
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Lus10037673 [exp]	17.0	0.7880
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Lus10025604 [exp]	22.3	0.7877
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Lus10035745 [exp]	22.8	0.7678
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10008967 [exp]	23.2	0.7621
AT2G40430			unknown protein		Lus10037530 [exp]	24.5	0.7764

Compare expression of checked genes

Lus10031573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.