Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52180 382 / 2e-129 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015101 [exp] 778 / 0 AT5G52180 445 / 4e-154 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G140900 [exp] 443 / 4e-153 AT5G52180 433 / 3e-149 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10268 [flax] [poplar] Tmemb_161AB Predicted transmembrane protein 161AB
Representative CDS sequence Show only first row Show all	>Lus10031574 pacid=23155925 polypeptide=Lus10031574 locus=Lus10031574.g ID=Lus10031574.BGIv1.0 annot-version=v1.0 ATGCAGCAGACATTATGGCAATCAATTCAGCTCTACAAGCTCCCAATCCTGGAGATCGCTCTCTCAATGACACTAACCCTCCTCTCATCGACGATCCTCA AATTCCCAATCTTACTCCTCCATGGACTCCACACTTACATCCAGCCCGATGTAAACCCTTCCACTAACGGCGGCATCAAAGCCGCAATCCGGCGACCCTC CGAAGCAGACCCACAACCGAAGAGGAAAAGTAAGCAGTCCAAGGATAAGTTTGAGTTCGACGAGAATCAAGCTCAGATCTTCAGACTCAAGCTCGATTCA GCTCACCTCAATTCCAGACTCTACTTCAAGGACTACTGGTATTCCTTCACTTACTCTCTCATCGCTCTTTCCTGCTTGTTTCTCCACAATTACTCGGGAG AAAGAAATGAAAAAGAAGGAGAAGGAAAAAAGATTGGAGCTTTTGCTAATGGATCGTTGATTCCGGCGGTTTTGATCATTGTATCGCTGCTTAAAATGTT TGTTTCGTTAGGGAAAACTTCCTTTGAGCGATCGGCATCCAAGAAGTCTGAGAAGAGACTTGGGTTTCTGATGGGGGTTTTAGGGTTTGTGATTGGGTTA TTAATTTGTTCTTCTCGGTTTGCAAGTTCTGTTCTTGATTTTGAATTGGGGTCATCATCAATTGATGGGTATGGCAAGTTCTTCGTTGCTCTAATGATGG GTTGTATTGCTGGGTTTCTCTACATGGGTGCTGGCAAGAATGCAAGATCGTTCTGGATCGGGACTGATCAGACTCGATCAAACATGGCGATAATCTCGTG TGGATGGCTCGGCAGAACGATTCTGTACGCGAATTACGTAACAGTTTTGCTCGCTGCATTGCTGTGGATTCGCCCGTTATCCGAGATTCTCCACCGTACT GGCAATGCTGACAGTTTGATTGGAAGTTTAGGGTTCCACCGATCTGAATTCGAGCAAATCAGAATGTGGGCGTTGCTAGGTTCGGCCGCCATTCAAATCG TGGCGCTAAGGCCGAACTTGCAGATGTTCTTAAACGAAGCCGTGTTGTCGTGGTACCAGAGGTTGCATGCTAGCAGGGTTCCTGATCTGGAATTCAGCAG AGCTAAAGTGTTCCTCCATAACCATTACTTGTGCCTTGCTGGTCTGCAGTTCTTCGCCCCTCCGGTACTGGTGTTCCTCTTTCTGGGGTTGTCGGGGATC GATGGGAATTCGTCGTTGAAGAGTGTTCGCGAGGTGATCTGTGGATCTCTACTGCTGATGCCTTGCACGGCTTTCATCAGAGACGTGGGTGTGTTTATGG CTTGGTGGGTTGTTTTCGTTTGGACGGTTTTCACTTCCACTAGCTTGCTGTTCTACAGACGCGGCACTTTGTACGTTTCTTGA
AA sequence Show only first row Show all	>Lus10031574 pacid=23155925 polypeptide=Lus10031574 locus=Lus10031574.g ID=Lus10031574.BGIv1.0 annot-version=v1.0 MQQTLWQSIQLYKLPILEIALSMTLTLLSSTILKFPILLLHGLHTYIQPDVNPSTNGGIKAAIRRPSEADPQPKRKSKQSKDKFEFDENQAQIFRLKLDS AHLNSRLYFKDYWYSFTYSLIALSCLFLHNYSGERNEKEGEGKKIGAFANGSLIPAVLIIVSLLKMFVSLGKTSFERSASKKSEKRLGFLMGVLGFVIGL LICSSRFASSVLDFELGSSSIDGYGKFFVALMMGCIAGFLYMGAGKNARSFWIGTDQTRSNMAIISCGWLGRTILYANYVTVLLAALLWIRPLSEILHRT GNADSLIGSLGFHRSEFEQIRMWALLGSAAIQIVALRPNLQMFLNEAVLSWYQRLHASRVPDLEFSRAKVFLHNHYLCLAGLQFFAPPVLVFLFLGLSGI DGNSSLKSVREVICGSLLLMPCTAFIRDVGVFMAWWVVFVWTVFTSTSLLFYRRGTLYVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52180			unknown protein		Lus10031574 [exp]	0	1
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10014435 [exp]	3.2	0.9282
AT1G62020			Coatomer, alpha subunit (.1)		Lus10016481 [exp]	4.0	0.9275
AT1G67930			Golgi transport complex protei...		Lus10007330 [exp]	5.5	0.9152
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10037643 [exp]	7.1	0.9059
AT2G01970			Endomembrane protein 70 protei...		Lus10026371 [exp]	7.7	0.9086
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10039053 [exp]	9.9	0.8888
AT4G01400			unknown protein		Lus10002677 [exp]	10.2	0.8922
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10023936 [exp]	11.7	0.8997
AT4G01400			unknown protein		Lus10030195 [exp]	13.3	0.8892
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10006396 [exp]	13.5	0.8824

Compare expression of checked genes

Lus10031574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.