Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35730 588 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G32295 499 / 9e-171 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G21865 291 / 1e-92 PEX22 peroxin 22 (.1) AT3G29060 78 / 1e-14 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 77 / 3e-14 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G14040 77 / 4e-14 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 75 / 1e-13 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 74 / 2e-13 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 74 / 2e-13 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G23430 74 / 3e-13 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039696 [exp] 729 / 0 AT5G35730 689 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10027149 [exp] 690 / 0 AT5G35730 654 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10015099 [exp] 489 / 9e-167 AT5G35730 506 / 2e-178 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10015100 [exp] 398 / 8e-134 AT3G21865 319 / 1e-109 peroxin 22 (.1) Lus10039690 [exp] 311 / 2e-100 AT3G21865 349 / 7e-122 peroxin 22 (.1) Lus10019230 [exp] 88 / 1e-17 AT1G69480 676 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10004285 [exp] 82 / 2e-16 AT1G69480 467 / 4e-160 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10034400 [exp] 76 / 1e-13 AT1G68740 1057 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10019155 [exp] 74 / 3e-13 AT1G68740 1065 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G121400 [exp] 698 / 0 AT5G35730 694 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G039000 [exp] 691 / 0 AT5G35730 691 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.007G121600 [exp] 305 / 3e-98 AT3G21865 322 / 4e-111 peroxin 22 (.1) Potri.017G038800 [exp] 301 / 7e-97 AT3G21865 320 / 2e-110 peroxin 22 (.1) Potri.010G164900 [exp] 78 / 2e-14 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090400 [exp] 77 / 3e-14 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G069000 [exp] 76 / 9e-14 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.010G165800 [exp] 72 / 7e-13 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G110800 [exp] 72 / 1e-12 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G132300 [exp] 71 / 3e-12 AT1G68740 1139 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0182 [flax] [poplar] IT PF03124 [flax] [poplar] EXS EXS family
Representative CDS sequence Show only first row Show all	>Lus10031575 pacid=23156024 polypeptide=Lus10031575 locus=Lus10031575.g ID=Lus10031575.BGIv1.0 annot-version=v1.0 ATGTTCGGAGGCCAAGTGATTCCTCCTGGAAACAGTCCGCATTTGAGGAAGTCTGGTAGCCGACCTGTTGTCTTTGATCTTGGTGGGGAGCATGGAAATG GTACGGAAGAAGGGTTTTCACCTTCATCAGAGTCTGATAACTTGAAGAGTCTTCCCGTTCAGTTGAGTGCTGCAGCTGCTATGATACCGTCTCCAGTACT GCTGTGGAGATTCAAGGTGTTCTTGTTCTTCCTATGGGGTTTTGTTTGCTGTAAGGTGAGTCAATCAACGTACTGCATTCTTTCAGATTGGATTGGATGG GGCTCTGTTATGAGAATGAGTGCGAATCTCCGGGACCTTTTTCTGTATGAGGTGTTCTTGTACTACAATCCTCTTCTTCTTGTGGCATTTGCGGTTTGGC TTTGGGGAGCTAATTTGTGGGTCTTTTCACAGTCAACAGTCAGTTACGGTAGGATATTTGACCTTGACCAAAGTCACCTCACATACAGAGAAATATGGAA GATTGCGATGTGGATGACAATAGTTGTCCCAAGTAGCATGACGGCCTACCTCTACCTGTATTCTCATGGAGAAGTGTCGTTGGCAGCTTCCCAACCAGTA TATCCACGGTACATGACTAAGCATGCTCAAAGCTCTCCTCTTTTCTTGCAGGCAATTTCGTTTGCCGACTTCTTCTTGGCTGATATCTTAACTTCCATGT CAAAGGTCTTTTCAGATCTGGAGCGTTCAGTATGCCGAATGGTTCATCGACAGGTTGCAACCATTGCTTGGTTTGAAGCTGACTCGATTTGTGGTAGTCA CTCTGTTGCAATCCCTTTGGTCCTCGTTCTTCCCTACCTGTTTAGGCTATTCCAGTGTCTTCGACAGTATAAGGACACCAAGGAGAAAACATCTCTTTTC AACGCCTTGAAGTATTCAACTGCAGTCCCAGTCATTTTCCTATCAGCATTGAAGTATCATGTCTTACCTGATAGGTGGACAAACTTTTACCGTCCGCTCT GGCTTCTTTCAAGCTTCTTGAACTGTTTGTACTCCTTCTACTGGGACGTCACCCGCGATTGGGACTTGAGGTATGTCATTGTTTACATTTCCTTAACGAG AGTATCCGATGGAACTCTGATTGATCTTGTTCTTTCCCTCTTTGTCATCAGTGGCTTCACTCGAATCTTCAAGTTCAACAGACCAAGTCTCTGTTCATAC TTATTGCATGGCCGGAAATGGGTTTACTTCTGGGTGATTGGAAGCAACTTGATCCTGCGGTGCACATGGACATACAAGCTCTCGGCTCATCTACGACACA ACTACCTGACGGTATTCGTGATAACTGCACTGGAGATCTTCAGGCGGTTCCAGTGGGTGTTTTTCCGGGTCGAGAACGAGCGGAACAAGATGAGTTTGAA ATCAGCAGCCAGCCAGCAGCAACAGCAGGTGTCAATGAGTGAGATGTCAATGGAGGATGAGAAGCTGAAGTTACTTGCTTCCAGTGATCACAATCTTGGT TGCGGTTTTGTTGCTTACGTGTGGGCTGAAGGCTCGATCCCAATAGGGGGTTTCTTACCATGCTACATTTCATGTCAGGATTCGAGGTCTGTCGGGGCAG TAGCAAGTCTTGCTCTAGCAATGGTGTTCACATGGAGATTGTTGAGGTCACCTAGTCCGCCCCAGAGAAGGCAACCGAAAAGACAAGCTCCTACAACGAG CACCTCTTCTGCAGGTGCCACGCAATCGATGCCTTCCAGAGACAGCTCATCTTCGGACGATTTGAGAACCCAGAATGTCGTTGATGAGTTCTTCCAGCCT GTAAAACTCACCTTGGGGCAAGTAGTGAGGCAAAAGTTAAGTGAAGGCAGAAAGGTCACTTGCCGTTTGCTTGGGGTAATCCTCGAAGAGAGTACTCCAG AAGAGCTCCAGAAACAAGCAACTGTTAGACCCTCTGTTCTGGAAGTGTTGTTGGAGATCACCAAGTTTTGTGATCTTTATCTCATGGAAAGAGTTCTTGA CGACAAAAGTGAAAAGAAAGTACTTGATGCTTTGGAGAGTGCAGGAGTTTTCGCCTCCGGTGGTTTAGTCAAAGAAAAGGTTCTCTTTAGCAGCACAGAA ACTGGAAGAACGTCTTTCGCTCGACAACTGGAACCGGACTGGCATATCGACAGCAGCCCTGAGATCGTCACCCAATTAGCTAGATTTATCAAGTATCAAC TCCACGTCTCACCAACGAAGCTCGAACGGTGCCCTGGAAACGTCGTCAGCTCTACATCACTGGAGCAATTCTTTGGATCAGTATGA
AA sequence Show only first row Show all	>Lus10031575 pacid=23156024 polypeptide=Lus10031575 locus=Lus10031575.g ID=Lus10031575.BGIv1.0 annot-version=v1.0 MFGGQVIPPGNSPHLRKSGSRPVVFDLGGEHGNGTEEGFSPSSESDNLKSLPVQLSAAAAMIPSPVLLWRFKVFLFFLWGFVCCKVSQSTYCILSDWIGW GSVMRMSANLRDLFLYEVFLYYNPLLLVAFAVWLWGANLWVFSQSTVSYGRIFDLDQSHLTYREIWKIAMWMTIVVPSSMTAYLYLYSHGEVSLAASQPV YPRYMTKHAQSSPLFLQAISFADFFLADILTSMSKVFSDLERSVCRMVHRQVATIAWFEADSICGSHSVAIPLVLVLPYLFRLFQCLRQYKDTKEKTSLF NALKYSTAVPVIFLSALKYHVLPDRWTNFYRPLWLLSSFLNCLYSFYWDVTRDWDLRYVIVYISLTRVSDGTLIDLVLSLFVISGFTRIFKFNRPSLCSY LLHGRKWVYFWVIGSNLILRCTWTYKLSAHLRHNYLTVFVITALEIFRRFQWVFFRVENERNKMSLKSAASQQQQQVSMSEMSMEDEKLKLLASSDHNLG CGFVAYVWAEGSIPIGGFLPCYISCQDSRSVGAVASLALAMVFTWRLLRSPSPPQRRQPKRQAPTTSTSSAGATQSMPSRDSSSSDDLRTQNVVDEFFQP VKLTLGQVVRQKLSEGRKVTCRLLGVILEESTPEELQKQATVRPSVLEVLLEITKFCDLYLMERVLDDKSEKKVLDALESAGVFASGGLVKEKVLFSSTE TGRTSFARQLEPDWHIDSSPEIVTQLARFIKYQLHVSPTKLERCPGNVVSSTSLEQFFGSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10031575 [exp]	0	1
AT4G34960			Cyclophilin-like peptidyl-prol...		Lus10025052 [exp]	1.0	0.8626
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10006335 [exp]	2.4	0.8535
AT1G58350		ZW18	Putative serine esterase fami...		Lus10036214 [exp]	2.6	0.8285
AT3G15410			Leucine-rich repeat (LRR) fami...		Lus10032667 [exp]	4.0	0.8262
AT1G67170			unknown protein		Lus10019966 [exp]	9.2	0.8427
AT2G46580			Pyridoxamine 5'-phosphate oxid...		Lus10005977 [exp]	9.9	0.8204
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10041012 [exp]	11.1	0.7836
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10032606 [exp]	12.6	0.8115
AT5G12240			unknown protein		Lus10026824 [exp]	15.3	0.8330
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Lus10011437 [exp]	15.3	0.8147

Compare expression of checked genes

Lus10031575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.