Plant FIBer expression Database

Lus10031576 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF07893 DUF1668 Protein of unknown function (DUF1668)
Representative CDS sequence
>Lus10031576 pacid=23155769 polypeptide=Lus10031576 locus=Lus10031576.g ID=Lus10031576.BGIv1.0 annot-version=v1.0
ATGTTTGCAAAAACCATATTTTTCCGAGACGGTGTATGTTTGCGAAATACCACATCTTGGTGGTCACCCAAGCTTCAATTTTGTTCTTCAGTACCTAAGC
TGCGTAAGCCCGCTCCAATCATCACGAAGCATTTGGGGGAAATATACGTCCTTTATGGAGGGCGGTCGTATATTAGATGTTGGCATGGTGAGGCCAGCGA
ATCAGACAACTGCTTTGTGGTATTGAGCAATGATGGTAAGGAATGGAACCCTCTTACTTCTCCTCCCTTCTACGCTGAAGGCAGTGAGAAATTCCGTATC
TCTCTCAAGCTGTGGTATTTGGGTGCTTTTGGGAGCAAGCTGTGTATGAGAATTGGACAGACATTGTATTGCTATGATGTTAAGAAGGATGTGTGGGAAG
AGAATCTTAAGTTAAACAAATGGAGACTTCTAGAAGGCTCAATAACCTTGTCGGCGTTATCAACAGAGTCGTCTTATGTTGTCATCTGTATTGACGCTCT
TGATACGGAACTGCATCATGGAATCTATGCTGTGTTGGTAGATGGAGAGGGGAATACATCAGGCTTTCAAGTTGTTCATGAAACAACTGGAGCCCACGAT
AGCATTACCTCTTTTAAGCTGATTGAACTGGAAACTGGGGAGGAGAGTGATGGTAGACGCAACTGCACATTTGCAGTGGTGTTTAACTCATGTTGCAGCA
TGACCGGATTGACAGTGTTTAGGGGTCTCTCTGTCATCATACTTGGGCAAGGAAGTGGAGCATGTGGCAAGACGACCGAAAAATGA
AA sequence
>Lus10031576 pacid=23155769 polypeptide=Lus10031576 locus=Lus10031576.g ID=Lus10031576.BGIv1.0 annot-version=v1.0
MFAKTIFFRDGVCLRNTTSWWSPKLQFCSSVPKLRKPAPIITKHLGEIYVLYGGRSYIRCWHGEASESDNCFVVLSNDGKEWNPLTSPPFYAEGSEKFRI
SLKLWYLGAFGSKLCMRIGQTLYCYDVKKDVWEENLKLNKWRLLEGSITLSALSTESSYVVICIDALDTELHHGIYAVLVDGEGNTSGFQVVHETTGAHD
SITSFKLIELETGEESDGRRNCTFAVVFNSCCSMTGLTVFRGLSVIILGQGSGACGKTTEK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10031576
[exp]
0 1
AT5G20690 Leucine-rich repeat protein ki... Lus10005175
[exp]
19.9 0.5437
AT5G39680 EMB2744 EMBRYO DEFECTIVE 2744, Pentatr... Lus10001483
[exp]
20.4 0.5732
AT1G29395 COR413IM1, COR4... cold regulated 414 thylakoid m... Lus10004599
[exp]
42.3 0.4645
AT3G07610 IBM1 increase in bonsai methylation... Lus10004602
[exp]
57.7 0.4833
AT4G34260 AXY8, FUC95A ALTERED XYLOGLUCAN 8, 1,2-alph... Lus10013883
[exp]
83.9 0.4768
Lus10032831
[exp]
97.9 0.4752
AT5G13230 Tetratricopeptide repeat (TPR)... Lus10025047
[exp]
105.0 0.4310
AT1G19880 Regulator of chromosome conden... Lus10010614
[exp]
111.8 0.4384
AT1G07020 unknown protein Lus10026396
[exp]
136.9 0.4321
AT2G03630 unknown protein Lus10037082
[exp]
156.1 0.4170

Lus10031576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.