Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23160 131 / 2e-33 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23140 127 / 2e-32 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23180 123 / 6e-31 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23150 119 / 1e-29 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT1G11410 114 / 1e-27 S-locus lectin protein kinase family protein (.1) AT4G23230 112 / 2e-27 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G11530 112 / 3e-27 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G11480 110 / 2e-26 CRK32 cysteine-rich RLK (RECEPTOR-like protein kinase) 32 (.1) AT1G11330 110 / 2e-26 S-locus lectin protein kinase family protein (.1.2) AT4G21400 107 / 2e-25 CRK28 cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015091 [exp] 283 / 3e-86 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031581 [exp] 213 / 4e-64 AT4G23310 213 / 2e-60 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 (.1) Lus10015095 [exp] 209 / 1e-62 AT4G23310 220 / 4e-63 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 (.1) Lus10031579 [exp] 210 / 3e-62 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10015093 [exp] 193 / 3e-61 AT4G23160 147 / 1e-41 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10018378 [exp] 118 / 3e-32 AT4G23180 180 / 1e-53 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10027146 [exp] 111 / 9e-27 AT4G23180 451 / 1e-150 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10009583 [exp] 102 / 3e-26 AT4G23310 164 / 2e-47 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 (.1) Lus10007602 [exp] 108 / 6e-26 AT1G65800 788 / 0.0 receptor kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G120900 [exp] 143 / 5e-38 AT4G23180 454 / 3e-151 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025200 [exp] 126 / 5e-32 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026350 [exp] 124 / 4e-31 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G024632 [exp] 120 / 8e-31 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025100 [exp] 114 / 9e-31 AT4G23180 205 / 4e-63 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024900 [exp] 121 / 3e-30 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 120 / 4e-30 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.004G026100 [exp] 119 / 1e-29 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024500 [exp] 119 / 1e-29 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024800 [exp] 119 / 1e-29 AT4G23180 663 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10031577 pacid=23155896 polypeptide=Lus10031577 locus=Lus10031577.g ID=Lus10031577.BGIv1.0 annot-version=v1.0 ATGAAACCAGACAGGCAGAAAGTTAAAGAAGTTCTGTACAATGCTGACAGAGGCTATACGTCACCAGAAGACTGCAATTCATGTGCAAGCAACTTCTCTA CACAGATCACAGAGCTTGGCCCCAACCAAAAGGAGGCTCCCATGTTCGATGACCGATGTACGCTGCAGTATGCTGATTGGAACTTCTTCTCCACCGCCGA TGCTCTCCCCCAGATCACGATGATGAGTTCGTTGAACTTGTCGTACGGGGACTCTTACAACGTTCAGATAAAGGGGTTTCTCAAGAATATTTCGTCGGTT GCTGCAAGTGATCGTTCGAAGCTGGCTGTTGGGAGAAGTAAATATAAGGATTTCCCGGATTTATATGGGATGGTGCAGTGTACGCTAGACATTTCTGCAT CGGATTGCATGCATTGTCTTCAAGTTGTCTCGGACTATGTTCCGAAGATCTTAGGTGATGCTGCTGGCGGGAGATTGTTCGCTCTGAGTTGCAATCTTAG TGGGTGGCACCAGAGTATGCTAGACACGGCCACTTTTCAGTCAAGTATGATTGTGTACAGCTTCGGTATCCTTCTGTTGGAGCTTGTGACGGGCCGGAGG AACAAGATCCGAAACTCCATGAATCTTCAGAGTCACGTATGGGATCAATGGAGAAATGGGATGGCTCTAGAGGCGAGAGATCCAACGATAGGGAACCGGT GCGTGAACGTGGAGGTGTTGAAGTGCATACACATCGGTTTGCTATGCGTTCAAGAGTCGGTTGCGGATAGGCCAACAGTGTCGGAAATTGTAATGATGTT GAGCAGCCATACTGTCACCTATCCAACACCTTTGGAGCCTGCCTTCTTCGTAAACAGAGGAGAAAGTTTAGAAGCAGAAGATGATGATAATGATGATGAA GAATGCCAGAAGAATTCTAATGGAGATGAACTTGTTCAGTCCAAATCAGAACCACTACTGCAATTGTCTATAAATGATGTGTCCATCACGGATTTGCACC CTCGATGA
AA sequence Show only first row Show all	>Lus10031577 pacid=23155896 polypeptide=Lus10031577 locus=Lus10031577.g ID=Lus10031577.BGIv1.0 annot-version=v1.0 MKPDRQKVKEVLYNADRGYTSPEDCNSCASNFSTQITELGPNQKEAPMFDDRCTLQYADWNFFSTADALPQITMMSSLNLSYGDSYNVQIKGFLKNISSV AASDRSKLAVGRSKYKDFPDLYGMVQCTLDISASDCMHCLQVVSDYVPKILGDAAGGRLFALSCNLSGWHQSMLDTATFQSSMIVYSFGILLLELVTGRR NKIRNSMNLQSHVWDQWRNGMALEARDPTIGNRCVNVEVLKCIHIGLLCVQESVADRPTVSEIVMMLSSHTVTYPTPLEPAFFVNRGESLEAEDDDNDDE ECQKNSNGDELVQSKSEPLLQLSINDVSITDLHPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031577 [exp]	0	1
					Lus10003629 [exp]	1.4	0.9145
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032214 [exp]	3.9	0.8984
					Lus10006254 [exp]	3.9	0.9244
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10006065 [exp]	4.6	0.8946
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10042436 [exp]	6.6	0.8839
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10018230 [exp]	7.3	0.8895
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10029564 [exp]	7.5	0.9087
					Lus10011314 [exp]	9.2	0.9082
AT1G77460			Armadillo/beta-catenin-like re...		Lus10029690 [exp]	11.2	0.8969
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10027842 [exp]	12.4	0.8092

Compare expression of checked genes

Lus10031577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.