Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23280 355 / 2e-114 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G21230 353 / 1e-113 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT4G11490 349 / 4e-112 CRK33 cysteine-rich RLK (RECEPTOR-like protein kinase) 33 (.1) AT4G23200 348 / 7e-112 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) AT4G21410 345 / 3e-110 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT3G45860 335 / 2e-106 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G00970 335 / 2e-106 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1) AT4G23180 332 / 4e-105 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G05200 332 / 4e-105 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23150 330 / 8e-105 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015092 [exp] 940 / 0 AT4G23180 397 / 1e-130 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10031582 [exp] 769 / 0 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10015094 [exp] 565 / 0 AT4G23160 432 / 7e-143 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10031580 [exp] 545 / 0 AT4G23160 424 / 1e-139 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10015091 [exp] 378 / 2e-116 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031579 [exp] 357 / 7e-115 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10027146 [exp] 345 / 3e-110 AT4G23180 451 / 1e-150 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10033752 [exp] 321 / 1e-104 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10016862 [exp] 325 / 1e-101 AT4G27290 702 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G120900 [exp] 399 / 9e-131 AT4G23180 454 / 3e-151 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G029700 [exp] 389 / 5e-127 AT4G21410 578 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030000 [exp] 389 / 5e-127 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028800 [exp] 388 / 1e-126 AT4G21410 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G027600 [exp] 372 / 2e-122 AT4G23280 461 / 3e-156 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) Potri.011G029000 [exp] 375 / 1e-121 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G027900 [exp] 370 / 9e-121 AT4G23180 542 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026200 [exp] 360 / 3e-116 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G025425 [exp] 357 / 3e-115 AT4G21410 556 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G024632 [exp] 337 / 4e-111 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10031578 pacid=23155973 polypeptide=Lus10031578 locus=Lus10031578.g ID=Lus10031578.BGIv1.0 annot-version=v1.0 ATGCAGCTTCATCTTCTACATTTCACTCTCCTCTTCATACTTCCATGGATTCATCATGTCCAGGCTGCCACAGTAACTTGTGTGACCGATACGAATTACA CTTTTGGGAGTCAATACCAGCAGAACCTAAACCTCGCCTTAACATCCTTAGCTGCCAATGCATCTCAGTCGGATTACATCACTACTTCCATTGGATGGAG ACCTGATTCGGTCTACGGACAAGTCCAGTGTAGAGGGTACACTCCCACAGACGCCTGCCAAGCTTGTGCAAGCAATCTGGCCGCTGAGATCGTTCGAACG TGTCCTAACCAGAAGCGGAGTTCTATAGACAGCGACAAGTGTTCTTTACAGTACTCGGACTCGAATTTCTTCTCGACCATGGACAGCGAGCCGCGTCTCT ACAAGTATGGTGCCATTGGTCCAGCCGGTCGTGTTGCCTTGGAAGGAAAGCTAGAGCAGTTTCTTAAGTCTCTGTCGCCATTTGCTGCAGCTAGTACTTC CAGGGTCTATTCTGGGATGATGACTACTGCTGATATCGATGGTCGGAACATCTATGGTATGGTGCAATGCTCTAAAGGCATATCAGGAGGTGACTGTTTA ACTTGTCTCGACGACATTGCAACGAGGTATGTGGTTTCCCCGGACAAGATGGGCCAAGGTGAAATTGGCTTGTTAGTTGCTCAAAGTTGCAATCTTCGGG TCGATTTCTATCAGTTTTTCGCAGTTGCATCGCCACCGCCCACCTCTCAGCCTTTACCCCCAACTCCACATCACTCGACAAACCATGGTTGGCGAGCGAT AAACTTATGTAAAGTTGGAGATGGCAAGAGAAGTTTGGAGTTGCTGTTCATTGAGTTTGATAAACTCAGACAAGCAACCGAAAGCTTTTCAGATCGAAAC AAGCTCGGACAAGGTGGCTTCGGTCCAGTTTATAAGGGGAAAATGCTGGATGGGCAAGAAATAGCTGTGAAAAGGCTATCGACTAGCTCGAAGCAGGGTC TAGAAGAGCTCCAGACAGAAGTGATGTTTGTTGCTAAACTGATGCACCAGAATCTGGTGAGGCTGGTAGGATTCTGCATTGAAGAAGAGGAAAAGCTTCT TGTCTATGAATACTTGCCGAATGGGAGTCTGGACAAGTTTCTTTTCGATGAGAAGAGAAGGCAGAAACTCACTTGGGAAATGAGGTACAATATCATTGTC GGGATTGCTCGAGGATTGTTGTACCTGCACGAGGAACACCCACTAAAGATCATTCACCGCGATATGAAAGCCAGCAACATTTTGCTGGACGAGTCTATGA CACCTAAAATTTCTGATTTCGGGCTGGCGAGACTGTTTCCTGGATCGAGAAATCACTGCTTTACCAATAGGATAATAGGCACATATGGCTACATGGCACC GGAGTATGCAGTTCGAGGGCGCTACTCGACTAAATCCGACGTCTATAGCTTTGGAATTCTGGTGTTGGAGATCATAACAGGTAGAAAGAACTCTAGCTTC CAGGATTCCAGGAATCTTCAAAGCTATGCATGGAGGCATTGGATTAACGGAACAGCGTTGAAGATACTGGACCCGACCATAGGCGAAGAGTTTAAGAAAT ATGAAGTCCTGAAGTGCATTAACATAGGACTGTTATCTGTTCAAGAAGCAGCTGAGAAGAGACCGACAATGTCTGATGTCATTTTGAAGCTTGGAAGCTA TACAAAGCTATGTCCACCTCTTTTACTAACCGGAATTTCGGACACCAAGAACACAACTCCTCCAGATTCTTCAAATGAAGATTCTGAGATTACTCGATCT AAAGAAGATATATAA
AA sequence Show only first row Show all	>Lus10031578 pacid=23155973 polypeptide=Lus10031578 locus=Lus10031578.g ID=Lus10031578.BGIv1.0 annot-version=v1.0 MQLHLLHFTLLFILPWIHHVQAATVTCVTDTNYTFGSQYQQNLNLALTSLAANASQSDYITTSIGWRPDSVYGQVQCRGYTPTDACQACASNLAAEIVRT CPNQKRSSIDSDKCSLQYSDSNFFSTMDSEPRLYKYGAIGPAGRVALEGKLEQFLKSLSPFAAASTSRVYSGMMTTADIDGRNIYGMVQCSKGISGGDCL TCLDDIATRYVVSPDKMGQGEIGLLVAQSCNLRVDFYQFFAVASPPPTSQPLPPTPHHSTNHGWRAINLCKVGDGKRSLELLFIEFDKLRQATESFSDRN KLGQGGFGPVYKGKMLDGQEIAVKRLSTSSKQGLEELQTEVMFVAKLMHQNLVRLVGFCIEEEEKLLVYEYLPNGSLDKFLFDEKRRQKLTWEMRYNIIV GIARGLLYLHEEHPLKIIHRDMKASNILLDESMTPKISDFGLARLFPGSRNHCFTNRIIGTYGYMAPEYAVRGRYSTKSDVYSFGILVLEIITGRKNSSF QDSRNLQSYAWRHWINGTALKILDPTIGEEFKKYEVLKCINIGLLSVQEAAEKRPTMSDVILKLGSYTKLCPPLLLTGISDTKNTTPPDSSNEDSEITRS KEDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10031578 [exp]	0	1
AT1G13970			Protein of unknown function (D...		Lus10036799 [exp]	1.0	0.9214
AT5G63180			Pectin lyase-like superfamily ...		Lus10006241 [exp]	3.5	0.8860
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035585 [exp]	4.2	0.8662
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10006065 [exp]	6.6	0.8589
AT1G13970			Protein of unknown function (D...		Lus10000174 [exp]	8.7	0.8544
					Lus10017767 [exp]	8.7	0.8212
AT3G27440		UKL5	uridine kinase-like 5 (.1)		Lus10022289 [exp]	14.7	0.8535
AT1G09170			P-loop nucleoside triphosphate...		Lus10020682 [exp]	16.1	0.8509
AT5G66310			ATP binding microtubule motor ...		Lus10014268 [exp]	20.2	0.8380
AT3G01510		LSF1	like SEX4 1 (.1)		Lus10022236 [exp]	20.8	0.8267

Compare expression of checked genes

Lus10031578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.