Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23160 459 / 2e-147 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23140 440 / 4e-146 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G21410 423 / 1e-139 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G05200 421 / 7e-139 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G38830 407 / 2e-133 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G23230 395 / 8e-131 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G21400 394 / 8e-128 CRK28 cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (.1) AT4G21230 391 / 1e-127 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT4G23220 387 / 5e-125 CRK14 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) AT4G00970 385 / 5e-125 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015091 [exp] 853 / 0 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10027146 [exp] 511 / 6e-174 AT4G23180 451 / 1e-150 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10031582 [exp] 507 / 2e-172 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10015094 [exp] 486 / 4e-164 AT4G23160 432 / 7e-143 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10031580 [exp] 480 / 3e-161 AT4G23160 424 / 1e-139 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10015095 [exp] 450 / 3e-151 AT4G23310 220 / 4e-63 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 (.1) Lus10018382 [exp] 451 / 2e-150 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 446 / 4e-148 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007633 [exp] 436 / 3e-144 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G120900 [exp] 613 / 0 AT4G23180 454 / 3e-151 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025200 [exp] 473 / 8e-159 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026350 [exp] 470 / 8e-158 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G026100 [exp] 459 / 2e-153 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024228 [exp] 449 / 1e-149 AT4G23180 551 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024404 [exp] 445 / 6e-148 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024101 [exp] 444 / 1e-147 AT4G23180 531 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028400 [exp] 442 / 1e-146 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G025425 [exp] 440 / 3e-146 AT4G21410 556 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028600 [exp] 440 / 6e-146 AT4G21410 554 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10031579 pacid=23155771 polypeptide=Lus10031579 locus=Lus10031579.g ID=Lus10031579.BGIv1.0 annot-version=v1.0 ATGAAGCTAAAAGCTCTTCACTTGTTCTGCATTGCAAATCTTTTCCATGTAATCCACTCTACAAACGCACAACTCTCCCCATTTTTCGTCTGTGACCGTT ACTTGAACAACTACACACTCTTCAGCCCTTACCACCGAAGCCTGAACACAACTCTTTCGTCGTTAGCAGCAAACGCATCTCGAACAGGAGGCTACTTCAC TACTTCAACACGCTATGCCTCTGCAGTTTCCTACGGACTCGTACAATGCAGAGCCTACATCTCATCCCAAGACTGCACAACCTGTGCAAAGACACTATCT GCTACAATCACGCAACTTTGTCCTAACTTAAAAGAAGCTTCCATATGCGACGAACTTTGTACGCTTCAGTATGCTGATTGGGACTTCTTCTCTACTCCTG ATGTCCACCCGAGGATTATGGTTTCCAGTCCGGTGAATTTATCGTACCCGGATTCTTACAAGGTTCATTTACAAGGGTTTTTAAATAATCTGTCCTTCAA GGCTGCAAGTGATCCTTCAAAGCTAGCTGTTGGGAGAAGTAGATATGAAGATTTTCAGTATGTGTATAGTATGGTGCAGTGTACACTGGACATTTCTGGC TCTGATTGCCTGAATTGTCTCGAAATAGTTTCGGGCTATATACCAAGGAGTATTGCTGTGGCAGCTTCTGGTGTAAGATTGTTCTCTTTTAGTTGCAATC TCAGGTATGAGACTTATCCCTTCTTTCGACTGCAAATCTCGCCGCCTGCTGCCTCTTCTACCGTTCCTCCGTTGATGCAACCCAACTCTACATCTACCAG AACAAACCCGACCAATGGCTATGGAAAGAACTCGAAGGCCAGAACTGTTGTTTTAGTGACCATATCTGTGTTGGCTTCAGTACTATCTGTGTTTGCTCTC GTTTTTGCCATTGTTTATTACTTCCTTCATGTCCGGGATTCGAGCATTAATCGAGGTAACAATGGTGATGACGGAAGAGCTGAATCACTTATAATCAGCC TCAATGTTCTGAAAGCAGCAACAGGGGATTTTTCTTCAGAAAACAAACTAGGTGAAGGAGGTTTCGGTACCGTTTACAAGGGAAAGCTGTCCAATGGGCG AGAAATTGCTGTCAGGAGACTGTCGACCAGCTCGAGGCAAGGCCTGGAAGAGCTTAAAACAGAAGTGATGTCATCGATAGCCAAACTGTTGCACAGGAAC CTTGTAAGATTGCTAGGATTCTGTCTCGAAGAAGACGAGAAGATTCTGGTGTATGAATATCTACCTAATGGTAGCCTTGACAAAATTTTATATGATCCTA AAAGAAGAGTTGATCTGGATTTCGGAACAAGGTACAACATCATCATCGGCGTTGCTCGAGGACTACTATACCTGCATGAAGATTCACAGCTCAGGATCAT CCACCGTGACCTGAAAGCGAGCAACATTCTACTGGATGAGTCCATGAGTCCCAAAATTTCTGATTTCGGGTTAGCCAGACTTTTCCATGGGAATGAAATT CAAATTGCAGGAACTTGCGGCTACATGGCACCAGAGTATGCTAGACACGGCCACTTTTCGACCAAATCCGACGTCTACAGCTTTGGTATCCTTGTGCTGG AACTAGTAACAGGCTGCAGGAACAAGATCCGGAACTCGATGAATCTTCAAAGTCATGTATGGGATCATTGGAGCAAAGGGGTGGCTCTACGGTCGAGCGA TCCAGCCATGGGAAACCAATGTGCAAACACCGAGGTGTTGAAGTGCATACACATCGGTTTGCTTTGCGTCCAAGAATCTTTCGCTGATAGACCAACAATG TCGGAAGTCGTTATGATGCTCAGCAACCATACTGTAACCTATCCAACACCTTCACAGCCTGCTTTTTTCATAGACAGAGGAGAGAGTTTCGAAGCAGAAG ACGACAATAACGATGAAGAAACTACTCACTTCAGATCAGAACCATTGCAACTATCTTTAAATGATGTCTCCATCACAGATTTATACCCTCGTTGA
AA sequence Show only first row Show all	>Lus10031579 pacid=23155771 polypeptide=Lus10031579 locus=Lus10031579.g ID=Lus10031579.BGIv1.0 annot-version=v1.0 MKLKALHLFCIANLFHVIHSTNAQLSPFFVCDRYLNNYTLFSPYHRSLNTTLSSLAANASRTGGYFTTSTRYASAVSYGLVQCRAYISSQDCTTCAKTLS ATITQLCPNLKEASICDELCTLQYADWDFFSTPDVHPRIMVSSPVNLSYPDSYKVHLQGFLNNLSFKAASDPSKLAVGRSRYEDFQYVYSMVQCTLDISG SDCLNCLEIVSGYIPRSIAVAASGVRLFSFSCNLRYETYPFFRLQISPPAASSTVPPLMQPNSTSTRTNPTNGYGKNSKARTVVLVTISVLASVLSVFAL VFAIVYYFLHVRDSSINRGNNGDDGRAESLIISLNVLKAATGDFSSENKLGEGGFGTVYKGKLSNGREIAVRRLSTSSRQGLEELKTEVMSSIAKLLHRN LVRLLGFCLEEDEKILVYEYLPNGSLDKILYDPKRRVDLDFGTRYNIIIGVARGLLYLHEDSQLRIIHRDLKASNILLDESMSPKISDFGLARLFHGNEI QIAGTCGYMAPEYARHGHFSTKSDVYSFGILVLELVTGCRNKIRNSMNLQSHVWDHWSKGVALRSSDPAMGNQCANTEVLKCIHIGLLCVQESFADRPTM SEVVMMLSNHTVTYPTPSQPAFFIDRGESFEAEDDNNDEETTHFRSEPLQLSLNDVSITDLYPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031579 [exp]	0	1
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10016180 [exp]	1.4	0.9269
AT2G29040			Exostosin family protein (.1)		Lus10003440 [exp]	1.4	0.9302
AT3G19920			unknown protein		Lus10010180 [exp]	3.5	0.8332
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Lus10008073 [exp]	4.5	0.8037
AT3G15280			unknown protein		Lus10005404 [exp]	4.5	0.8362
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10014307 [exp]	6.0	0.7951
AT2G15220			Plant basic secretory protein ...		Lus10001359 [exp]	6.6	0.8369
AT1G07175			unknown protein		Lus10018252 [exp]	6.6	0.7969
AT2G35615			Eukaryotic aspartyl protease f...		Lus10035668 [exp]	8.5	0.7592
					Lus10019810 [exp]	9.0	0.8603

Compare expression of checked genes

Lus10031579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.