Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05200 379 / 2e-122 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23140 374 / 4e-120 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23180 372 / 2e-119 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23160 384 / 1e-118 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G11530 369 / 2e-118 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G21230 366 / 1e-117 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT4G23130 364 / 2e-116 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23190 363 / 4e-116 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1) AT4G21410 362 / 2e-115 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G23270 360 / 4e-115 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015094 [exp] 1010 / 0 AT4G23160 432 / 7e-143 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10031582 [exp] 770 / 0 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10015092 [exp] 557 / 0 AT4G23180 397 / 1e-130 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10031578 [exp] 545 / 0 AT4G23180 422 / 5e-134 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10015091 [exp] 482 / 1e-153 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031579 [exp] 457 / 3e-152 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10015096 [exp] 387 / 1e-126 AT4G05200 234 / 7e-69 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 368 / 9e-118 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007633 [exp] 364 / 3e-116 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G120900 [exp] 518 / 7e-176 AT4G23180 454 / 3e-151 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025200 [exp] 410 / 4e-134 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026100 [exp] 406 / 1e-132 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026350 [exp] 394 / 4e-128 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028600 [exp] 389 / 4e-126 AT4G21410 554 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029300 [exp] 387 / 2e-125 AT4G21410 539 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G024900 [exp] 387 / 4e-125 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G030212 [exp] 385 / 4e-125 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G023550 [exp] 385 / 1e-124 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024228 [exp] 384 / 4e-124 AT4G23180 551 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10031580 pacid=23155944 polypeptide=Lus10031580 locus=Lus10031580.g ID=Lus10031580.BGIv1.0 annot-version=v1.0 ATGGGCGGATTCAAGCGCTTTGTTATTATCCAACGGTGCATAGTGCATGGTGGAAGTATCTCTAGACTTCGGGCCTTGATTTTGGAGTCAGCTCCCAAGG GCCCATCAGGGATTCATCATTTTCTTCAGACACTCGAAGCTTCCACCATAATGTGTCCGATCGACAAGGACTACACTTCGGGCAGTCAATACCAGCTGAA CCTAAACCTCACCTTAACTTCCTTAGCCAACATTGCCTCCGTTTCCGACTACTTCACTACTTCCATCGGTCAAAGCCTCAATGTGGTCTACGGACTTATT CAGTGTACCGGTTACACTCCCAGGGACGCCTGCCAAGCTTGTGCAAGCAATATGGCTACTGAGATCATCCAAACATGTCCTAATCAGAAGCAGGGCTCTG CATACGTGGACGAGTGTTCTTTGCTCTACTCGGACCGGAATTTCTTCTCGATGATGGACAGCGAGCCGCGTTTCTTCAAGTGGAAGAATAATACTGATGA TAATGCAACAGATATTGTTCTCTTTAGGAGCAACGTGGAGAAGTTGCTCGATTCTCTGTCGCAGTCTGCTGCAGTTTATCCTTCCAGGGTTTGTTTTGGG ATGACTAGTTACAATACAGAAGGTCGAAACATCTATGCTATGGTGCAATGCTCTAAAGGTATATCAGGAAGTGACTGCTTAACTTGTCTTGAGAATATTA CAGTGAGCTATATGTTTTTCCTGAAAGGAGAAGGTGGATTATTAGTTGCTCAGAGTTGCAATTTGCGAGTCGATACCTATCAGTTTCTCGCGGTTGCACC ACCGGCTCAACCTAGACCGAGTATATCCGGTGCACCTCCTTCGTCAGATTCAGAACTTGATGGAAGAAGAAACCAATCGACAAGCGACGGTTCTTCGTTA GCCCCCCCGGGAACAAGAAAGAAGCACTCCAAGATTATGATAATGTTGGTGGTCATGGCTGCAGCTTTTGCTTTGGTACTGATAACTGGTATCTATAGCG TCTTACTGTGGCGGAAACAAATGAGGAGTAGAGTTGGTAGAGGGAGCAACAGAAGTTTGGAGTCGCTATTGATCGAATTTGGAAAACTTAGAGAAGCAAC CAACAAATTTTCAGATGGAAACAAGCTTGGACAAGGCGGCTTTGGTCCAGTTTATAAGGGGAAAACGCGGGATGGACAAGAAATAGCTGTGAAAAGGCTA TCAAGCAGCTCGAAGCAGGGTCTAGAAGAGCTCGAGACAGAAGTAATGTTGGTTGCTAAACTGATGCACCAGAATCTAGTCAGGCTGATAGGCTTCTGCA TTGAAGAAGAAGAAAAGCTTCTTGTCTATGAGTACTTGCCAAATGGAAGTCTGGACAAATTTCTATTCGATCAGACGAGAAGTGTGAAACTCACTTGGGA AATGAGGTACAACATCATAGTCGGGATTGCGAAAGGATTGCTGTATTTGCACGAGGAATACCCGCTAAAGATCATTCACCGTGATATGAAAGCCAGCAAC ATTTTGCTGGATGAGTCCATGACACCAAAGATTTCTGATTTAGGGTTGGCAAGACTCTTTCCCGGAACGCAGAATCACTGCTTTACCAATAGGATCATCG GCACATATGGTTACATGGCACCGGAGTATGCAGTACGAGGACGGTACTCTACTAAATCTGATGTCTATAGCTTTGGAATTCTCGTCTTGGAGATTATAAC AGGTAGAAAGAACTCTAGTTTCGAAGACTCGAGGAATCTTCAGAGTTATGCATGGAAGCATTGGATTAATGGAACTGCGTTGAAAATATTGGATCCAATC TTAGGTGAAGAATTTAAGAAAGATGAAGTCCTGAAGTGCATCAACGTAGGACTGTTGTCTGTCCAAGAAGTAGCTGAGAAGAGACCGACCATGTCGGAAG TCATTTCGAAGCTCGGAAGCTACACAAAGCTAACTGTTGGAAATTTCGATATTAAAAACTATACCGCTTTAGATTCTTCAAATGTAGATTCTGATGTCAC TGGCTCTAACGAAGATACCACAGCTGTCAGAAAAAAGATTGTTTCTTCAAGGTGGAAATGA
AA sequence Show only first row Show all	>Lus10031580 pacid=23155944 polypeptide=Lus10031580 locus=Lus10031580.g ID=Lus10031580.BGIv1.0 annot-version=v1.0 MGGFKRFVIIQRCIVHGGSISRLRALILESAPKGPSGIHHFLQTLEASTIMCPIDKDYTSGSQYQLNLNLTLTSLANIASVSDYFTTSIGQSLNVVYGLI QCTGYTPRDACQACASNMATEIIQTCPNQKQGSAYVDECSLLYSDRNFFSMMDSEPRFFKWKNNTDDNATDIVLFRSNVEKLLDSLSQSAAVYPSRVCFG MTSYNTEGRNIYAMVQCSKGISGSDCLTCLENITVSYMFFLKGEGGLLVAQSCNLRVDTYQFLAVAPPAQPRPSISGAPPSSDSELDGRRNQSTSDGSSL APPGTRKKHSKIMIMLVVMAAAFALVLITGIYSVLLWRKQMRSRVGRGSNRSLESLLIEFGKLREATNKFSDGNKLGQGGFGPVYKGKTRDGQEIAVKRL SSSSKQGLEELETEVMLVAKLMHQNLVRLIGFCIEEEEKLLVYEYLPNGSLDKFLFDQTRSVKLTWEMRYNIIVGIAKGLLYLHEEYPLKIIHRDMKASN ILLDESMTPKISDLGLARLFPGTQNHCFTNRIIGTYGYMAPEYAVRGRYSTKSDVYSFGILVLEIITGRKNSSFEDSRNLQSYAWKHWINGTALKILDPI LGEEFKKDEVLKCINVGLLSVQEVAEKRPTMSEVISKLGSYTKLTVGNFDIKNYTALDSSNVDSDVTGSNEDTTAVRKKIVSSRWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031580 [exp]	0	1
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021455 [exp]	8.4	0.9656
AT4G08250	GRAS		GRAS family transcription fact...		Lus10028056 [exp]	10.8	0.9654
AT5G17740			P-loop containing nucleoside t...		Lus10003213 [exp]	18.2	0.9559
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10021743 [exp]	20.2	0.9628
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033633 [exp]	23.0	0.9628
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10039746 [exp]	24.4	0.9583
AT2G30770		CYP71A13	cytochrome P450, family 71, su...		Lus10019459 [exp]	25.2	0.9611
AT2G42350			RING/U-box superfamily protein...		Lus10005104 [exp]	26.1	0.9522
AT2G38870			Serine protease inhibitor, pot...		Lus10018783 [exp]	28.9	0.9527
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10017624 [exp]	29.4	0.9607

Compare expression of checked genes

Lus10031580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.