Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 172 / 4e-46 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G05200 170 / 3e-45 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23130 169 / 9e-45 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G21410 162 / 3e-42 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G23150 160 / 6e-42 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G23160 159 / 1e-40 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23140 152 / 5e-39 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23270 151 / 7e-39 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT3G45860 150 / 3e-38 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G21400 146 / 8e-37 CRK28 cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015095 [exp] 931 / 0 AT4G23310 220 / 4e-63 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 (.1) Lus10015091 [exp] 442 / 5e-140 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031579 [exp] 383 / 3e-125 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10015096 [exp] 345 / 1e-111 AT4G05200 234 / 7e-69 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031582 [exp] 228 / 3e-66 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031580 [exp] 225 / 8e-65 AT4G23160 424 / 1e-139 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10015094 [exp] 221 / 1e-63 AT4G23160 432 / 7e-143 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10007635 [exp] 219 / 2e-61 AT4G21410 385 / 6e-122 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10015093 [exp] 200 / 3e-61 AT4G23160 147 / 1e-41 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G120900 [exp] 294 / 1e-90 AT4G23180 454 / 3e-151 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025425 [exp] 198 / 2e-55 AT4G21410 556 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G026200 [exp] 191 / 6e-53 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G028400 [exp] 190 / 3e-52 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G025200 [exp] 189 / 4e-52 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026100 [exp] 180 / 1e-48 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024900 [exp] 178 / 5e-48 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 177 / 7e-48 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.011G029300 [exp] 174 / 1e-46 AT4G21410 539 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028600 [exp] 173 / 2e-46 AT4G21410 554 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10031581 pacid=23155881 polypeptide=Lus10031581 locus=Lus10031581.g ID=Lus10031581.BGIv1.0 annot-version=v1.0 ATGAAGCAGCCAGTTCAACCAAAAGTTGCGTACTTGCTCTGGATTGCATGCCTTTTTCATGCAATCCATCTGACAAGTGCACAACTTGCTTACATCTGCG GTGTCTCCACGAACTACACGTCCCCGAGTCCTTACAGCCGAAACCTGAACCTGACCCTCTCATCCTTATCCGCAAACGTCTCGAAAACCGGATACTTCAC CATCGCAACGGGCAGTGATGGCTCCGAGGAGGTGTCCTATGGACTTGTACAATGTAGAGGCTACACTTCATCAGAAGCCTGCAAAGCCTGTGCAAGCACG CTATCCGCTCAAATCACAAACTTCTGTCCCAACCAAAAGGAAGCTTCTATATTCAACGAGAACTGTACACTGCAATATGCTGACTGGAACTTCTTTTCTA CAGCTGATGTCACCCCCTACGTTGTTATGGCTAGTAATGAAAATGCAACGTACCCGGATGCTTTCAACGTTCAATTACAAGTTCTTCTGAAGAATCTCTC GTTGGAGGCTGCAGCTGATTCTTCAATAAAGCTTGCTGTTGGGAGAAGTAGATATAAATCTTTTGAGTATGTATATGCCATGGTGCAGTGTGTACTAGAC ATTTCTGTGTCTGACTGCCGGAACTGTCTTCAAGTGATTTCGAGCTATGTTCCGAGTTTTATGGCTGATAGAGATGGCGGGAGAATGTTCGCTTTGAGTT GCAATCTCAGGTACGAGAAGAGTTCCTTCTTTCAGTTGCCAATTCCACCACCACCTGGCCGCTCTTCGACGCTTCCTCCGTTGATCCAACCCAAATCCAC CTCTGTCGGAACTAATTTGACTGATGGTTACGGAAGGAAGTCCAAGACCAGAACTGTTACTGTGGTGGTCATACCTGTGCTGGCTTCTGTGGCTGTGCTA GCTCTAGTTTGTTCCACTGCTTATTACTTCTTTCATGTCCGGGCTTCGGCCACAAGTCCTGTTGGCAAAATAGGGTGCTCTACAAGGGATGGTGATGCAA GAGCTGAATCACTTATGGTTAGCCTCAAGGTGCTGAAAGTGGCAACACAGGGTTTTTCTTCCGAAAGCAAATTAGGTGAAGACAGCTTTGGTCCAGTTTA CAAGGGGAAGCTGCCTTGTGGGCAAGAAATTGTTGTCAAGAGACTGTCGACCGGCTCAAGGCTAGACCTAGAAGAGCTTAGAACAGAAGTGATGTTGGTT GCTAAACTTCTGCATACCAACCTTGTAAGGTTGTTAGGATTCTGCCTTGAAGAAGAAGAGAAGATTCTCGTTGGCTACATGGCGCCTGAGTATGCTAGAC ATGACCACTTCTCAGTCAAGTCCGATGTCTACAGCTTTGGCATCTTGGTACTAGAGATTGTAACAGGCCGAAGGAACAATTCTAGGATCCGGAACTCCGT CAATCTTCAAAGCCATGTATGGGATCAATGGAGCAATGGGATGGCTGTAGAGTTGAGAGATCCAGCCATGGGGGATCAATTTGCAAACATGGAGGTGTTG AAGTGCATACACATCGGGTTGTTGTGCGTTCAAGAATCTATTGTCGATAGACCAACAATGTCAGAAATTGTAATGATGCTCAGCAGCCATACTGTCACCT ATCCGACGCCTTTACGACCTGCTTTTTTCATCGATAGAGAAGAAGGGAGTTCTCAAGCAGATGATGATGAATATCAGAGATACTCCACTGGAAATGAACT CGTTCTTTTCAACTCCGAACCATTGCAACTGTCTATAAATGATGTCTCCATCACAGATCTATACCCCCGTTGA
AA sequence Show only first row Show all	>Lus10031581 pacid=23155881 polypeptide=Lus10031581 locus=Lus10031581.g ID=Lus10031581.BGIv1.0 annot-version=v1.0 MKQPVQPKVAYLLWIACLFHAIHLTSAQLAYICGVSTNYTSPSPYSRNLNLTLSSLSANVSKTGYFTIATGSDGSEEVSYGLVQCRGYTSSEACKACAST LSAQITNFCPNQKEASIFNENCTLQYADWNFFSTADVTPYVVMASNENATYPDAFNVQLQVLLKNLSLEAAADSSIKLAVGRSRYKSFEYVYAMVQCVLD ISVSDCRNCLQVISSYVPSFMADRDGGRMFALSCNLRYEKSSFFQLPIPPPPGRSSTLPPLIQPKSTSVGTNLTDGYGRKSKTRTVTVVVIPVLASVAVL ALVCSTAYYFFHVRASATSPVGKIGCSTRDGDARAESLMVSLKVLKVATQGFSSESKLGEDSFGPVYKGKLPCGQEIVVKRLSTGSRLDLEELRTEVMLV AKLLHTNLVRLLGFCLEEEEKILVGYMAPEYARHDHFSVKSDVYSFGILVLEIVTGRRNNSRIRNSVNLQSHVWDQWSNGMAVELRDPAMGDQFANMEVL KCIHIGLLCVQESIVDRPTMSEIVMMLSSHTVTYPTPLRPAFFIDREEGSSQADDDEYQRYSTGNELVLFNSEPLQLSINDVSITDLYPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10031581 [exp]	0	1
AT5G24800	bZIP	BZO2H2, ATBZIP9	BASIC LEUCINE ZIPPER O2 HOMOLO...		Lus10026973 [exp]	2.0	0.8806
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10037630 [exp]	3.5	0.8984
AT2G28085			SAUR-like auxin-responsive pro...		Lus10001397 [exp]	7.7	0.8512
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10022407 [exp]	10.1	0.8346
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10038048 [exp]	12.5	0.8798
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10024544 [exp]	25.1	0.8681
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10005193 [exp]	25.5	0.7885
AT3G47570			Leucine-rich repeat protein ki...		Lus10043368 [exp]	25.5	0.8452
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10014505 [exp]	26.4	0.8615
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028715 [exp]	29.0	0.8458

Compare expression of checked genes

Lus10031581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.