Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05200 407 / 7e-134 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23180 406 / 2e-133 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23160 402 / 7e-126 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G21410 387 / 7e-126 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G23140 382 / 5e-124 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23220 379 / 4e-122 CRK14 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) AT4G38830 376 / 7e-122 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G23270 374 / 2e-121 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G23150 374 / 4e-121 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G21230 373 / 8e-121 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015094 [exp] 819 / 0 AT4G23160 432 / 7e-143 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10031580 [exp] 793 / 0 AT4G23160 424 / 1e-139 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10031578 [exp] 778 / 0 AT4G23180 422 / 5e-134 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10015092 [exp] 751 / 0 AT4G23180 397 / 1e-130 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10015096 [exp] 537 / 0 AT4G05200 234 / 7e-69 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10015091 [exp] 523 / 7e-170 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031579 [exp] 483 / 4e-163 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10027146 [exp] 471 / 9e-159 AT4G23180 451 / 1e-150 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10018382 [exp] 437 / 3e-145 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G120900 [exp] 554 / 0 AT4G23180 454 / 3e-151 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026100 [exp] 441 / 9e-147 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025200 [exp] 439 / 3e-146 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026350 [exp] 434 / 4e-144 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028400 [exp] 429 / 3e-142 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G030000 [exp] 416 / 8e-137 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028800 [exp] 416 / 1e-136 AT4G21410 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029700 [exp] 414 / 2e-136 AT4G21410 578 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G025900 [exp] 411 / 3e-135 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.004G024900 [exp] 409 / 4e-134 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10031582 pacid=23155877 polypeptide=Lus10031582 locus=Lus10031582.g ID=Lus10031582.BGIv1.0 annot-version=v1.0 ATGCAGCTTCTTGCCTTACATTTCTTGTTGTTCCTCTTACTTCCATGGATCAGTTATGTTCGAGGAGCCACCATAATTTGTCAGAATGACAGGAATTACT ACACACCCGGGAGCCAATTTCAGCTCAACCTAAACCAAACCCTTGCTTCCTTAGCCGTCAACGCCTCTCTCTACGGCTACTCTACTACTTCTGTTGGTCA TAGCCCCGACACAGCTTACGGGCTCGTACAATGTAGTGGCTATACTACCGCGGATGACTGCCGAGTTTATGCAAACTATATGACCACCAGGATCGTGCAA ATTTGTCTTAACCAGAAGCAGGGCTCTATATACACTGATGGGTGTTCTTTGCAGTACTCGGACCGGAATTTCTTCTCGACTATGGACAGCGATCCAATCG TCTACGAGTGGAATACAAAAAACGCGACGGATCTTGTTCTATTAAGGAGCAACCTCGAGAAGCTGCTAAAATCAATGGCACCATCTGCTGCAGCTAGTCC TTCGAGGATATATTCCGGGATGGCTCCTTATATCGGAGGCCGAGACATCTATGCTATGGTGCAGTGCTCTAAAGGCATATCAGGAAGTGACTGCTTAACT TGTCTCCAGAATATTACAACGAGCTTTATGGTTTTTCTGAACCGGGAGCAGCAGAGGGAAGGTGGTTCGTTAGTTACTCCGAGTTGCAATTTGCGGTTCG ATACCTATCAATTCTTTTCGGTTTTATCTCAGTCTGGATTGAATCAACCTCCAACTCCTGCATTAGTCCCATCAAATTCAGAAGGAACAAGGAAAAAGTC AAAGACCATGATTATGTTGGTCATGGCTGCCGGTTTTGCTTTTGCTTTTGCTTTGATAGTGATAACTGGTATCTACAGCTCCTTATTTTGGAGGAATCGT ATGAGGAATAGAGTTGTTGGAGATAGCAATAGACATTTGGAGGCGCTGTTGATTGAATTTAATGAACTCAGAGAAGCAACCAACAACTTTTCAGACAAAA ACAAGCTTGGACAAGGTGGCTTTGGTCCAGTTTATAAGGGTAAAATGCTAAATGGGCAATATGTAGCTGTGAAAAGGCTGTCAACTAGCTCGAAGCAGGG TCTAGAAGAGCTCGAAACAGAAGTGACGTTCATTGCTAAACTAAGGCACCAGAATCTGGTTAGGCTTGTAGGATTCTGCATAGAGGAGGAAGAAAAGCTT CTTGTCTATGAATACCTGCCTAATGGGAGTCTGGACAAGTTTCTATTTGATCAGAAGAGGAGCCTGAAGCTTAACTGGGAAATGAGGTATAATATCATTG TTGGGATCGCTAGAGGGTTGTTGTACCTGCACGAGGAACACCCACTCAAGATCGTTCACCGTGATATGAAAGCTAGCAACATTTTGCTAAACGAGTCCCT GACTCCTAAAATTTCTGATTTTGGACTGGCCAGGCTCTTTCCTGGAACACAAAATCACCTGTTTACCAATAGGATAGTTGGCACATATGGCTACATGGCA CCAGAATATGCAGTTCGAGGGCGCTACTCAACTAAATCCGACATATATAGCTTTGGAATTCTGGTCTTGGAGATCATAACAGGTAGAAAGAACTCTAGCT TCCAGGATTCCAGGAATCTTCAAAGCTATGCATGGAAGCATTGGATTAATGGAACAGCCTTGACGATACTAGACCCGAACATAGGCGAAGAGTTTAAGAA AGATGAAGTCCTGAAGTGCATTAACATAGGACTGTTGTCTGTTCAAGAAGCAGCCGAGAAGAGACCGACAATGTCAGATGTCATTTTGAAGCTTGGAAGC TACACAAAGCTATGTCCACCTCCTTTACTAACTGGAATTTCAAATACTAAGAACACAACTCCAGATTCTTCAAATAAATTTTCTGACGTCGCCAGATCTA ACATAGATGATATTGCTTAA
AA sequence Show only first row Show all	>Lus10031582 pacid=23155877 polypeptide=Lus10031582 locus=Lus10031582.g ID=Lus10031582.BGIv1.0 annot-version=v1.0 MQLLALHFLLFLLLPWISYVRGATIICQNDRNYYTPGSQFQLNLNQTLASLAVNASLYGYSTTSVGHSPDTAYGLVQCSGYTTADDCRVYANYMTTRIVQ ICLNQKQGSIYTDGCSLQYSDRNFFSTMDSDPIVYEWNTKNATDLVLLRSNLEKLLKSMAPSAAASPSRIYSGMAPYIGGRDIYAMVQCSKGISGSDCLT CLQNITTSFMVFLNREQQREGGSLVTPSCNLRFDTYQFFSVLSQSGLNQPPTPALVPSNSEGTRKKSKTMIMLVMAAGFAFAFALIVITGIYSSLFWRNR MRNRVVGDSNRHLEALLIEFNELREATNNFSDKNKLGQGGFGPVYKGKMLNGQYVAVKRLSTSSKQGLEELETEVTFIAKLRHQNLVRLVGFCIEEEEKL LVYEYLPNGSLDKFLFDQKRSLKLNWEMRYNIIVGIARGLLYLHEEHPLKIVHRDMKASNILLNESLTPKISDFGLARLFPGTQNHLFTNRIVGTYGYMA PEYAVRGRYSTKSDIYSFGILVLEIITGRKNSSFQDSRNLQSYAWKHWINGTALTILDPNIGEEFKKDEVLKCINIGLLSVQEAAEKRPTMSDVILKLGS YTKLCPPPLLTGISNTKNTTPDSSNKFSDVARSNIDDIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10031582 [exp]	0	1
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10007327 [exp]	2.4	0.7647
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10020750 [exp]	10.2	0.7268
AT2G07680		ATMRP11, ABCC13	ATP-binding cassette C13, mult...		Lus10041661 [exp]	16.9	0.6784
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10034413 [exp]	17.0	0.6575
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10008204 [exp]	21.6	0.6404
AT3G01930			Major facilitator superfamily ...		Lus10032034 [exp]	24.0	0.6120
AT4G26410			Uncharacterised conserved prot...		Lus10007935 [exp]	25.4	0.6549
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10033315 [exp]	25.5	0.5632
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10033482 [exp]	38.4	0.5900
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10039869 [exp]	42.3	0.6097

Compare expression of checked genes

Lus10031582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.