Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21880 223 / 1e-68 CO COL12 B-box type zinc finger protein with CCT domain (.1) AT4G15250 208 / 2e-63 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT3G07650 187 / 1e-54 CO COL9 CONSTANS-like 9 (.1.2.3.4) AT5G48250 177 / 5e-51 CO COL10 B-box type zinc finger protein with CCT domain (.1) AT1G68190 110 / 1e-26 CO B-box zinc finger family protein (.1) AT2G33500 103 / 8e-24 CO COL14 B-box type zinc finger protein with CCT domain (.1.2) AT1G28050 102 / 1e-23 CO COL15 B-box type zinc finger protein with CCT domain (.1) AT2G47890 97 / 1e-22 CO COL13 B-box type zinc finger protein with CCT domain (.1.2) AT2G24790 73 / 3e-14 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT5G24930 72 / 2e-13 CO COL4, ATCOL4 CONSTANS-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015098 [exp] 553 / 0 AT3G21880 260 / 4e-84 B-box type zinc finger protein with CCT domain (.1) Lus10039695 [exp] 248 / 2e-77 AT4G15250 207 / 4e-63 B-box type zinc finger protein with CCT domain (.1) Lus10041096 [exp] 184 / 5e-54 AT5G48250 374 / 2e-129 B-box type zinc finger protein with CCT domain (.1) Lus10002578 [exp] 110 / 7e-26 AT1G28050 299 / 3e-97 B-box type zinc finger protein with CCT domain (.1) Lus10035257 [exp] 107 / 1e-25 AT1G68190 194 / 8e-59 B-box zinc finger family protein (.1) Lus10036419 [exp] 99 / 2e-22 AT5G48250 332 / 8e-112 B-box type zinc finger protein with CCT domain (.1) Lus10034625 [exp] 99 / 4e-22 AT1G68190 182 / 3e-52 B-box zinc finger family protein (.1) Lus10040900 [exp] 98 / 5e-22 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2) Lus10001806 [exp] 97 / 2e-21 AT1G28050 298 / 1e-96 B-box type zinc finger protein with CCT domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G121200 [exp] 308 / 8e-101 AT3G21880 291 / 1e-95 B-box type zinc finger protein with CCT domain (.1) Potri.017G039301 [exp] 298 / 4e-97 AT3G21880 288 / 2e-94 B-box type zinc finger protein with CCT domain (.1) Potri.014G170600 [exp] 131 / 1e-33 AT3G07650 328 / 3e-110 CONSTANS-like 9 (.1.2.3.4) Potri.002G214500 [exp] 114 / 1e-27 AT3G07650 355 / 9e-121 CONSTANS-like 9 (.1.2.3.4) Potri.008G125200 [exp] 104 / 5e-24 AT1G68190 144 / 8e-39 B-box zinc finger family protein (.1) Potri.001G061800 [exp] 100 / 1e-22 AT2G33500 213 / 6e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.003G166000 [exp] 100 / 2e-22 AT1G28050 204 / 2e-59 B-box type zinc finger protein with CCT domain (.1) Potri.014G134601 [exp] 94 / 6e-21 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2) Potri.002G208100 [exp] 88 / 8e-19 AT2G47890 276 / 4e-91 B-box type zinc finger protein with CCT domain (.1.2) Potri.001G323500 [exp] 85 / 1e-17 AT2G33500 213 / 2e-64 B-box type zinc finger protein with CCT domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10031584 pacid=23156056 polypeptide=Lus10031584 locus=Lus10031584.g ID=Lus10031584.BGIv1.0 annot-version=v1.0 ATGCCTACAATTCTTCCAGCGAACGCTCCTGCCCAAGACCTGAAACTTGCCCACCAACCTGTACAGATTCACACAAACAAAAAAATCACCACCTATCTCG GCGAAAACCCACCTTTCCATGCTGATTTCCTTGAATTGCTTGTGGAATGGTCGAAAACTATACCAATAAGAAGCTGGATTCCTGTTCCCCCCAAGTTGGG ATTTTTCCCTCCTTTTCAGATTAGGATTAAGGAGAGGGGAGGAAAGATGGAACCTTTATGTGAGTTTTGTAATGTGATGAAGGCAGTGGTGTACTGCAAA TCAGATTTGGCTAGATTATGTCTGCAGTGCGATGGACTTGTACATTCTGCCAACTCGTTGTCTCGTAGGCATCAGCGTTCGCTCCTCTGCGATAAGTGCA ATTCGCAGCCTGCATCAGCGATGTGTTTGGTTGAGAAGCTTTCGGTATGTCAAGGGTGTGACTGTAGCATTGCTAATGGGTGCTCAAGCTTGGGGCATAG GTTACATGTCTTGAATTACTACACAGGGTGCCCTTCCTCGTCAGAGTTCATGGGACTATGGTCTTCTGTTCTCGAGTTTCCAGCGAATGAGCTAAATTCA TGTTCTTCTAGGTTTGAGCCTTGGATGGCACCTCCTCCTCCGATGATTCCACCTAATGTGAGTTACATATCTTACAACAGAGATCAAGTATCGTTCCCAA CAGTTGAATCTAACGTGCCAAAGGTTCAATGTGAACAGGGTAGTTCAGTTGTTGAAAATCTCGGGCTCTGTGATGATGAAGATCTCTGTGATGGTCTCAA TATTGAGGGTGTGCAGCTGAGTTTGGAACACAGTGATGAGATATTCGGATTTGAAGATGTTGGAAAAGAGTGCAGCATGATCGAAAGCAACTTGTCATTT AAAGAATCCAAGATCAGTTCGATTGAAAATGTGATAGAGCCATCTCATGTTGCAGGGTCGAATAATTTAATGCTGGCTGTAAGTGGAGGGACTACTAATT GCTTTTATATGAACCCTAATTGCAATAGAAACATCAGCAGCCTAGGATTTCCCAGTGAGACTGCTGCCAAAGTTCATTCAAGCATTTCTCTCTCGATGTC CGGTGGAAGTAGTGTTGCTGATTACCAAGATTGTGAGTTGTCACCAGCGTTTCTAAGTGATGAATCTTCACCATGGGAGTCGATTACCGGTGGCCCACAT GCTAGGTTCTTGGCGAAGATGCGATACATGGAGAAGAAGAAGACACGAATGTTTGGGAAGAAAATAAGATATGCATCTCGTAAAGCGAGAGCTGATACGA GGAAATGCGTCAAGGGAAGATTCGTAAAAGCTGGTGAAGCATTTGACTACAACCCTCTTCCTAGAAGCGACTTCTGA
AA sequence Show only first row Show all	>Lus10031584 pacid=23156056 polypeptide=Lus10031584 locus=Lus10031584.g ID=Lus10031584.BGIv1.0 annot-version=v1.0 MPTILPANAPAQDLKLAHQPVQIHTNKKITTYLGENPPFHADFLELLVEWSKTIPIRSWIPVPPKLGFFPPFQIRIKERGGKMEPLCEFCNVMKAVVYCK SDLARLCLQCDGLVHSANSLSRRHQRSLLCDKCNSQPASAMCLVEKLSVCQGCDCSIANGCSSLGHRLHVLNYYTGCPSSSEFMGLWSSVLEFPANELNS CSSRFEPWMAPPPPMIPPNVSYISYNRDQVSFPTVESNVPKVQCEQGSSVVENLGLCDDEDLCDGLNIEGVQLSLEHSDEIFGFEDVGKECSMIESNLSF KESKISSIENVIEPSHVAGSNNLMLAVSGGTTNCFYMNPNCNRNISSLGFPSETAAKVHSSISLSMSGGSSVADYQDCELSPAFLSDESSPWESITGGPH ARFLAKMRYMEKKKTRMFGKKIRYASRKARADTRKCVKGRFVKAGEAFDYNPLPRSDF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21880	CO	COL12	B-box type zinc finger protein...		Lus10031584 [exp]	0	1
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10015883 [exp]	6.3	0.8949
AT4G15620			Uncharacterised protein family...		Lus10041528 [exp]	6.7	0.8974
AT1G20650		ASG5	ALTERED SEED GERMINATION 5, Pr...		Lus10013222 [exp]	11.0	0.8234
AT5G06270			unknown protein		Lus10004209 [exp]	13.8	0.8695
AT1G60060			Serine/threonine-protein kinas...		Lus10018736 [exp]	14.0	0.8945
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10009282 [exp]	14.4	0.8740
AT1G05300		ZIP5	zinc transporter 5 precursor (...		Lus10031099 [exp]	16.2	0.8519
					Lus10008697 [exp]	17.0	0.8945
AT5G54010			UDP-Glycosyltransferase superf...		Lus10013337 [exp]	17.7	0.8745
AT5G62360			Plant invertase/pectin methyle...		Lus10031138 [exp]	17.9	0.8931

Compare expression of checked genes

Lus10031584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.