Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54650 478 / 8e-156 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT4G15200 473 / 1e-155 AFH3 formin 3 (.1.2) AT3G25500 333 / 9e-100 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT3G05470 328 / 5e-99 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G67470 322 / 9e-97 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT2G43800 311 / 1e-92 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G70140 269 / 2e-78 ATFH8 formin 8 (.1) AT1G59910 252 / 3e-71 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G48360 206 / 6e-56 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G24150 191 / 4e-51 ATFH4, FH4 formin homologue 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015091 [exp] 775 / 0 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10039705 [exp] 610 / 0 AT5G54650 496 / 1e-163 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10018494 [exp] 566 / 0 AT5G54650 464 / 6e-151 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10011168 [exp] 490 / 3e-160 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10043077 [exp] 478 / 3e-155 AT5G54650 636 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10036609 [exp] 475 / 2e-154 AT5G54650 581 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10035827 [exp] 468 / 2e-151 AT5G54650 586 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10011524 [exp] 336 / 3e-101 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10025195 [exp] 332 / 3e-100 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G119900 [exp] 531 / 1e-176 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.001G416100 [exp] 513 / 1e-168 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.011G131700 [exp] 505 / 3e-165 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G054900 [exp] 356 / 2e-109 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.007G140200 [exp] 337 / 9e-102 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.013G017900 [exp] 332 / 7e-100 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.017G009900 [exp] 330 / 5e-99 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.005G026300 [exp] 327 / 3e-98 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.014G174700 [exp] 329 / 7e-98 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.002G240232 [exp] 324 / 5e-96 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10031585 pacid=23155975 polypeptide=Lus10031585 locus=Lus10031585.g ID=Lus10031585.BGIv1.0 annot-version=v1.0 ATGGGATCAAGAAGAGCAGGGTACATCCCGGCCTATGTAATTCTGCTTTTTTGGGTAGTTGCGGCTGTTTCTGCCGATCAGCTTCCTGAGATGAATGAAG ATATGGTAGAGAAGGCATGGAACCGCTGCAGGAAAGAGCTTGGGGATAATAAAGTTGTATTGGACGATTGTGGCTTGTTCAGTCTACTGGAATCAACCAG TGGATTGGAAGAATCTTCGTTGTTATCAAGAAGAAACATGCAGAATGGGAAAAGGGAACTTCTACATTGCCTGAGGAAGAAGAATCTTCTCTCTGATGAT GAAGCTAGCAGCCCTACTTGGCTAATCGATTGCGTTGAGCTAGTTGTAGAACGGCCGACTACTCGTCATAGATATCTGGCTGGTGAGCTTGATGTCCAAG TCAAGGACGTAAACCCTCCTGAAGCTGATGAAACAAGCCTTCATCAGCGTCGAGAACTTGGCTCAAAGAAGAAACATAAGAAGAAGACAAAGGCAGAAAG GGAGAGGCAAACCATTATTGCTATTGCTGCAACAGCAGTAGCAACCTTCATGATCGTTTCGGTGCTCTTCTGCTGCTGGCTCTGCTTGAGGAACAATGAA GCTGACATTGGTTATGTTGAAGGCAAAAAAGATGAGAAGCCTCTTCTAAACTTGCGTGATTCTCTTGCAAGTTCCTCTCTGTCTGCAAGTCTGGCAAGCG CGAGTACTAGAGATCCAGTCCTTGAAAGCAACCTCTCTATGCATCCGGAAGCTAAAACTGTGGAGGGACAATCGCCAGAAATGATAACGAACGAAGGAGA TGTGATTCCTCCTCTAAAACCTCCTCCTGGAAGACCGGTACCTGCACCTCCCGCAAAACCTGCACCTGCACCTCCACCTGCACCAGTACCAGCACCTGCG GCTGCACCTGCGGCTGCACCTGCACCTGCACCCCCTCCACCTCATGCTGCTCCTCCACCGCCTCCCAAACCCCGTGCTCCACCGGCTCCATCCAGAAGGC CTGCACCTCCTGGACCAAAGAAGGGCAATAAGGGTGCTGGGAGTGATGCCGATGGTACTGATGATGGATCTCAAAAAACCAAGCTGAAACCTTTCTTTTG GGATAAGGTTATGGCCAGTCCTAATCAGTCCATGGTTTGGCATGAGATCAGTGGTGGATCTTTCCAGTTCGACGAGGAGATGATAGAGTCATTATTTGGC TATACGAATGCTAATAAAAATACCAATGAGCGAAGGAGAGATATAGCTGAAACTGCAGTTCAGTATATCCAGATCATCGATCCTAGGAAGGCTCAGAATC TGAATATACTTTTGAAAGCACTGAATGTTAGTACGGAAGAAGTTCTTGATGCTCTGCGAGAAGCTAACGAGCTTCCAGTGGAGCTTCTACAAACTTTGCT GAAGATGGCACCAACATCAGACGAGGAACTGAAGCTGAGGCTATACGCAGGCGAGCTTGCACAACTCGGCCCTGCAGAACGTTTCCTCAAAGCGGTTGTA GAAGTTCCTTTTGCTTTCAAGAGAGTCGAATCGCTGCTGTTTATGAGTGTTCTTCAGGAAGAAGTTACAACACTCAAAGAATCCTTTGCGACTCTCGCGG TTGCTTGCAATAAACTTACAAACAGCAGGCTGTTCCTGAAACTATTAGAAGCAGTGCTCAAAACCGGTAACCGGATGAACGATGGCACATACCGCGGCGG TGCACTAGCATTCAAGCTCGACACACTCTTAAAACTTGCCGACGTGAAGGGAACCGACGGGAAGACAACCCTTCTGAACTTCGTCGTCATCGAAATCATC CGTTCAGAAGGCATACGAGCTGTACGCGAAGCAAGAGCAAGTGCAAGCGTCTCGAGCGTCGTGTCAGAGGATAGTCTCGGGGACGACACAAATGATGTGG CAGCAGAAGAGCACTACTGCAACCTCGGACTCCAAGTGGTTTCAAGCTTAAGCAGCGATTTCGAGGAAGTAAAGAAGGGTGCCGTGTTAGATTCCGAGAT GCTTTCGTCAAGTCTGTCGAAACTCCGGGGATCCCTTATGAAGGCCAAGGCCTTTGTGCAATCCGACATGAAGAGCGACGAGGAGAGCGAGTTCTACATT TCGCTTGTGGCGTTCATGGACCGAGCAGACTCCGACATCACGTGGCTAACCGAGGAAGAGAAGAGGGTAACAGCTCTGATGAAGAGCACGGCCGATTACT TCCACGGGAACTCAGGGAAGGAAGAAGGTATGAGGCTATTCACAATTGTCCGTAGCTTCTTGACCATGTTGGATAAGGCCTGCAAAGAAGTGCAGGAAGC TAGAGCCAAGAAACAACAGCAGGCTGCCAAAGTATCATCCTTGAAGAAGGATAACCCTGGCGAGCTGTCCTCGAAAAGTTCAGCGAGCTCGCAGCAACAG CAGCAGCAGGATAATCTTCATCATAAGCTGTTTCCAGCCATTGCTGAACGAAGGAATGGATCTTCGAGTTCGGATGATGATAGCTCTGATGATTATGATG AGTAG
AA sequence Show only first row Show all	>Lus10031585 pacid=23155975 polypeptide=Lus10031585 locus=Lus10031585.g ID=Lus10031585.BGIv1.0 annot-version=v1.0 MGSRRAGYIPAYVILLFWVVAAVSADQLPEMNEDMVEKAWNRCRKELGDNKVVLDDCGLFSLLESTSGLEESSLLSRRNMQNGKRELLHCLRKKNLLSDD EASSPTWLIDCVELVVERPTTRHRYLAGELDVQVKDVNPPEADETSLHQRRELGSKKKHKKKTKAERERQTIIAIAATAVATFMIVSVLFCCWLCLRNNE ADIGYVEGKKDEKPLLNLRDSLASSSLSASLASASTRDPVLESNLSMHPEAKTVEGQSPEMITNEGDVIPPLKPPPGRPVPAPPAKPAPAPPPAPVPAPA AAPAAAPAPAPPPPHAAPPPPPKPRAPPAPSRRPAPPGPKKGNKGAGSDADGTDDGSQKTKLKPFFWDKVMASPNQSMVWHEISGGSFQFDEEMIESLFG YTNANKNTNERRRDIAETAVQYIQIIDPRKAQNLNILLKALNVSTEEVLDALREANELPVELLQTLLKMAPTSDEELKLRLYAGELAQLGPAERFLKAVV EVPFAFKRVESLLFMSVLQEEVTTLKESFATLAVACNKLTNSRLFLKLLEAVLKTGNRMNDGTYRGGALAFKLDTLLKLADVKGTDGKTTLLNFVVIEII RSEGIRAVREARASASVSSVVSEDSLGDDTNDVAAEEHYCNLGLQVVSSLSSDFEEVKKGAVLDSEMLSSSLSKLRGSLMKAKAFVQSDMKSDEESEFYI SLVAFMDRADSDITWLTEEEKRVTALMKSTADYFHGNSGKEEGMRLFTIVRSFLTMLDKACKEVQEARAKKQQQAAKVSSLKKDNPGELSSKSSASSQQQ QQQDNLHHKLFPAIAERRNGSSSSDDDSSDDYDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15200		AFH3	formin 3 (.1.2)		Lus10031585 [exp]	0	1
AT5G14210			Leucine-rich repeat protein ki...		Lus10041589 [exp]	5.5	0.6083
AT2G47790			Transducin/WD40 repeat-like su...		Lus10003441 [exp]	14.9	0.6495
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10038317 [exp]	30.4	0.5473
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10032979 [exp]	31.9	0.5929
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10005431 [exp]	55.1	0.5268
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10042514 [exp]	64.0	0.5624
AT4G27460			Cystathionine beta-synthase (C...		Lus10025651 [exp]	73.1	0.5604
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10013884 [exp]	75.5	0.5554
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10032700 [exp]	86.9	0.5407
AT2G33760			Pentatricopeptide repeat (PPR)...		Lus10025490 [exp]	98.6	0.5332

Compare expression of checked genes

Lus10031585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.