Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03210 446 / 9e-160 XTH9, EXGT-A6, XTR16 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) AT5G13870 313 / 3e-107 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) AT3G23730 303 / 3e-103 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT5G65730 299 / 1e-101 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT4G37800 297 / 6e-101 XTH7, XTR15 xyloglucan endotransglucosylase/hydrolase 7 (.1) AT2G06850 291 / 2e-98 XTH4, EXT, EXGT-A1 endoxyloglucan transferase A1, xyloglucan endotransglucosylase/hydrolase 4 (.1) AT4G25810 290 / 5e-98 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT4G14130 290 / 7e-98 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT5G57560 285 / 5e-96 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT5G57550 284 / 8e-96 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018503 [exp] 539 / 0 AT4G03210 439 / 9e-157 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10039715 [exp] 533 / 0 AT4G03210 441 / 1e-157 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10033755 [exp] 486 / 2e-174 AT4G03210 340 / 5e-117 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10003022 [exp] 320 / 1e-109 AT5G13870 506 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10011052 [exp] 318 / 3e-108 AT5G13870 507 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10040121 [exp] 308 / 5e-105 AT5G13870 493 / 5e-178 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10030923 [exp] 304 / 2e-103 AT5G13870 491 / 3e-177 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10020773 [exp] 299 / 1e-101 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007349 [exp] 298 / 2e-101 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G125000 [exp] 506 / 0 AT4G03210 450 / 3e-161 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.013G152400 [exp] 502 / 0 AT4G03210 442 / 2e-158 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.007G008500 [exp] 311 / 4e-106 AT5G65730 472 / 6e-170 xyloglucan endotransglucosylase/hydrolase 6 (.1) Potri.001G071000 [exp] 311 / 4e-106 AT5G13870 504 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.014G140300 [exp] 308 / 5e-105 AT5G13870 527 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.003G159700 [exp] 307 / 8e-105 AT5G13870 500 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.006G170001 [exp] 298 / 2e-101 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.006G169900 [exp] 298 / 2e-101 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.006G170100 [exp] 298 / 2e-101 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.011G077320 [exp] 293 / 3e-99 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10031586 pacid=23155882 polypeptide=Lus10031586 locus=Lus10031586.g ID=Lus10031586.BGIv1.0 annot-version=v1.0 ATGGCGGTCTCAATCTTCAGAATGTCTCTACTTGTTCAAGTTTTCATGGCATTTGCTATGGCGGGTATTGTTTCCTCTGCCAAATTCGACGAGCTGTTCC AACCAAGCTGGGCTACTGACCATTTGATCTACGAAGGGGATCAGCTCAAGCTCAAGCTCGACAACTATTCTGGATCTGGGTTTCAGTCCAAGAGCAAGTA CATGTTTGGGAAGGTCAACATTCAGATTAAGCTTGTGGAAGGAGACTCAGCTGGAACCGTCACTGCCTTCTACATGTCGTCGGAAGGTGCGAGTCACAAC GAATTCGATTTCGAGTTCCTGGGTAACACTACAGGGGAGCCTTACGTGGTGCAGACGAATGTGTATGTCAATGGTGTTGGCAATAGGGAGCAAAGGTTGA ACCTTTGGTTTGATCCCACCATGGATTTCCACAACTACTCCATCTTTTGGAACCCTAGCCAGGTCATATTCCTAGTGGACGATACACCGATAAGGCAGCA CACAAACCTGGAGAACAAAGGGATCCCATTCCCCAAAGACCAGCCGATGGGAGTCTACAGCTCGATATGGAATGCAGACGACTGGGCGACCCAAGGAGGC CGAATCAAGACCGATTGGACCCACGCTCCGTTCATCGCTTCCTACAGGGGTTTCGAAATCGATGCCTGTGAGATCCCTGCATCATCAGGGGTTTCAGCGG CGGATTTGGCCAAGAACTGCACCAGCAATGCTGAGAAGAAGTACTGGTGGGATGAACCAATCTTGTCTGAGCTGAACTTGCACCAGAGCCATCAGTTGCT TTGGGTTAAGGCCAACCACATGATCTATGACTACTGCACTGACAATTCTAGGTTCCCTGTGACACCTGAAGAGTGCCAGCATCACCATCATTAG
AA sequence Show only first row Show all	>Lus10031586 pacid=23155882 polypeptide=Lus10031586 locus=Lus10031586.g ID=Lus10031586.BGIv1.0 annot-version=v1.0 MAVSIFRMSLLVQVFMAFAMAGIVSSAKFDELFQPSWATDHLIYEGDQLKLKLDNYSGSGFQSKSKYMFGKVNIQIKLVEGDSAGTVTAFYMSSEGASHN EFDFEFLGNTTGEPYVVQTNVYVNGVGNREQRLNLWFDPTMDFHNYSIFWNPSQVIFLVDDTPIRQHTNLENKGIPFPKDQPMGVYSSIWNADDWATQGG RIKTDWTHAPFIASYRGFEIDACEIPASSGVSAADLAKNCTSNAEKKYWWDEPILSELNLHQSHQLLWVKANHMIYDYCTDNSRFPVTPEECQHHHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10031586 [exp]	0	1
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10016579 [exp]	1.4	0.9305
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10011473 [exp]	1.7	0.9127
AT4G35160			O-methyltransferase family pro...		Lus10025098 [exp]	5.5	0.8986
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025215 [exp]	6.3	0.9040
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10042882 [exp]	6.5	0.8893
AT5G43960			Nuclear transport factor 2 (NT...		Lus10023722 [exp]	6.8	0.9181
AT4G21620			glycine-rich protein (.1.2)		Lus10006730 [exp]	6.9	0.8544
AT3G02710			ARM repeat superfamily protein...		Lus10010958 [exp]	7.4	0.8807
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10024487 [exp]	11.0	0.8875
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10019438 [exp]	12.2	0.8679

Compare expression of checked genes

Lus10031586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.