Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03495 251 / 3e-78 HXXXD-type acyl-transferase family protein (.1) AT1G03940 250 / 1e-77 HXXXD-type acyl-transferase family protein (.1) AT3G29635 191 / 1e-55 HXXXD-type acyl-transferase family protein (.1) AT3G29590 184 / 5e-53 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT3G29670 179 / 4e-51 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT5G39090 174 / 5e-49 HXXXD-type acyl-transferase family protein (.1) AT5G39050 163 / 6e-45 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT5G61160 158 / 3e-43 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT5G39080 150 / 5e-40 HXXXD-type acyl-transferase family protein (.1) AT3G29680 144 / 3e-38 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033754 [exp] 749 / 0 AT1G03495 299 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Lus10018507 [exp] 452 / 6e-155 AT1G03495 286 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Lus10020714 [exp] 429 / 3e-147 AT1G03495 337 / 1e-111 HXXXD-type acyl-transferase family protein (.1) Lus10039746 [exp] 237 / 7e-73 AT1G03940 304 / 8e-99 HXXXD-type acyl-transferase family protein (.1) Lus10039745 [exp] 233 / 5e-71 AT1G03940 297 / 1e-95 HXXXD-type acyl-transferase family protein (.1) Lus10039721 [exp] 193 / 1e-58 AT1G03495 89 / 1e-20 HXXXD-type acyl-transferase family protein (.1) Lus10033599 [exp] 196 / 5e-57 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10041658 [exp] 189 / 3e-54 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10029276 [exp] 176 / 1e-49 AT5G39050 314 / 1e-102 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118101 [exp] 375 / 2e-126 AT1G03940 339 / 2e-112 HXXXD-type acyl-transferase family protein (.1) Potri.019G118000 [exp] 374 / 6e-126 AT1G03940 328 / 6e-108 HXXXD-type acyl-transferase family protein (.1) Potri.009G063500 [exp] 262 / 2e-82 AT1G03940 280 / 4e-89 HXXXD-type acyl-transferase family protein (.1) Potri.004G103200 [exp] 210 / 2e-62 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 206 / 6e-61 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 202 / 3e-59 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 199 / 5e-58 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 197 / 2e-57 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 197 / 3e-57 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 196 / 3e-57 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10031587 pacid=23155787 polypeptide=Lus10031587 locus=Lus10031587.g ID=Lus10031587.BGIv1.0 annot-version=v1.0 ATGGATGATAATCTTCAATCCCTGAAACTCCTCCACCATTTACAAGTCGCCCCGCCGCCGCCGTCCTCCACCGTCAACCTCCCTCTCACTTTCCTCGACT ACCCATGGCTACTCTGCCGCCCGATGCAGCGCCTCTTCTTCTACGACTTCCCTCACCCAACCCATCACTTCACCACAACCATCCTCCCTGCACTAAAACT CTCCCTCTCCGCCGCCCTCCGCCACTTCTACCCTCTCGCCGGCCGCCTCGTCTCCCCACCTCCTCCTCACCTCCCCCACCTCCTCTACGATCCCTCCGAT TCCTCCGTCCCCCTCACAATCGCCGAGTCAACCGCCGATTTCGACCAAACCGTCGCCTCCGCCGAAGCCAGAGACGCTACGGAGCTACGCCCTTTTGTTC CGAAACTCCCGGACTCCGTCGACAAACCCGACGGTACGAAGTTGGTCCCGCTGCTGGCTCTACAGATCACAATCTTCCCGGGGAAAGGTTTATGCGTCGG CGGCGAATTCGCACACGTTGTCTCCGATGGGATGGGCTTCCATCACTTCGTCAAATTCTGGGCTGCCCTGTTCAAATCTGGTGATGACGATTGTAATAGT AATACTACTGTTCCGTTGCCGTCTCACGATCGAGAATTGATCCGGAGAGCTTACCCAGATCTGGAATCGGTTATGCTGAGCCAGTGGTTTGAGTTTCGAT CGTCATGGGACTTCGATTCGGGTCCGGTTAAGTTCAAGGATCTGACCGATAAAGTCCGATCCACTTTCCTGATTACGAAGGAGAAGATCGAGAGGATGAA GATCTGGATTAGGAAAACCAATCGGAAGCCGTTTCATTTATCCACCTTCGTTTTGACCTCTGCTTTTATCTGGGTCAGTCTGATAAAATCCGAGGGGCGA CAAGACGACCACGAACTGTACCACATGAGCTTCGTCGCGGATTGCCGCCACCGCCTTCCGATCGGGCTACCGGAGACATACTTCGGGAACTGCTTAGGCA TTTACTACGTCTCGATCAGGAGAAGCGATGCGGTGGCCGGTGAAGGAGTGGCGACAGCTGCGGAGGCGATTGGGAGGAAAGTAGAAGAGCTGGAGAGCTC CAGCGGCGGCGGCGACGGAGGGAGGACAGGGTTGTTGGGAGGGGTGGAGAGGTGGATTCCGGGGTGGAAGGAGTTGTCGGAGGGAGGGAGGCTGATGGCG ACTGCTGGATCGCCGAAGCTGAAGGCGTACGACACCGATTTCGGGTGGGGGAAGCCGAGGAAGAGCGAGGTGGTTCAGGTGGATAGCTCCGGTGCGGTGT CGCTCTGCGAGAGTGGCGATGGAAGCGGTGGAATTGAGGTCGGATTGGCTCTGCCCAGCCGGAAGATGGACCTTTTCCGGCGGTTGTTTGACAATTTCCT CAGTCGACTTTGA
AA sequence Show only first row Show all	>Lus10031587 pacid=23155787 polypeptide=Lus10031587 locus=Lus10031587.g ID=Lus10031587.BGIv1.0 annot-version=v1.0 MDDNLQSLKLLHHLQVAPPPPSSTVNLPLTFLDYPWLLCRPMQRLFFYDFPHPTHHFTTTILPALKLSLSAALRHFYPLAGRLVSPPPPHLPHLLYDPSD SSVPLTIAESTADFDQTVASAEARDATELRPFVPKLPDSVDKPDGTKLVPLLALQITIFPGKGLCVGGEFAHVVSDGMGFHHFVKFWAALFKSGDDDCNS NTTVPLPSHDRELIRRAYPDLESVMLSQWFEFRSSWDFDSGPVKFKDLTDKVRSTFLITKEKIERMKIWIRKTNRKPFHLSTFVLTSAFIWVSLIKSEGR QDDHELYHMSFVADCRHRLPIGLPETYFGNCLGIYYVSIRRSDAVAGEGVATAAEAIGRKVEELESSSGGGDGGRTGLLGGVERWIPGWKELSEGGRLMA TAGSPKLKAYDTDFGWGKPRKSEVVQVDSSGAVSLCESGDGSGGIEVGLALPSRKMDLFRRLFDNFLSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10031587 [exp]	0	1
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020353 [exp]	1.4	0.9054
AT3G15810			Protein of unknown function (D...		Lus10032602 [exp]	4.0	0.8948
AT5G24460			unknown protein		Lus10015572 [exp]	6.7	0.8856
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10033754 [exp]	7.5	0.8762
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10023383 [exp]	8.8	0.8726
AT5G23230		NIC2	nicotinamidase 2 (.1)		Lus10040988 [exp]	9.0	0.8631
AT5G18850			unknown protein		Lus10033997 [exp]	10.6	0.8687
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10033886 [exp]	11.0	0.8532
					Lus10022598 [exp]	13.0	0.8727
AT4G38220		AQI	aquaporin interactor, Peptidas...		Lus10026565 [exp]	13.4	0.8473

Compare expression of checked genes

Lus10031587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.