Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27280 132 / 4e-41 Calcium-binding EF-hand family protein (.1) AT5G54490 130 / 2e-40 PBP1 pinoid-binding protein 1 (.1) AT2G46600 128 / 2e-39 Calcium-binding EF-hand family protein (.1) AT5G37780 49 / 3e-08 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 49 / 3e-08 ACAM-4, CAM4 calmodulin 4 (.1.2) AT5G21274 49 / 4e-08 ACAM-6, CAM6 calmodulin 6 (.1) AT3G50360 49 / 6e-08 CEN1, ATCEN2 CENTRIN 1, centrin2 (.1) AT3G43810 48 / 1e-07 CAM7 calmodulin 7 (.1) AT2G27030 47 / 1e-07 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT2G41110 46 / 3e-07 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033753 [exp] 230 / 9e-80 AT4G27280 133 / 3e-41 Calcium-binding EF-hand family protein (.1) Lus10018511 [exp] 186 / 1e-62 AT4G27280 140 / 2e-44 Calcium-binding EF-hand family protein (.1) Lus10039724 [exp] 185 / 5e-62 AT4G27280 139 / 1e-43 Calcium-binding EF-hand family protein (.1) Lus10036734 [exp] 172 / 4e-57 AT5G54490 107 / 2e-31 pinoid-binding protein 1 (.1) Lus10030227 [exp] 124 / 9e-38 AT2G46600 167 / 1e-54 Calcium-binding EF-hand family protein (.1) Lus10005985 [exp] 124 / 9e-38 AT2G46600 167 / 1e-54 Calcium-binding EF-hand family protein (.1) Lus10041288 [exp] 48 / 1e-07 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 48 / 1e-07 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 48 / 1e-07 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G151000 [exp] 167 / 5e-55 AT5G54490 147 / 7e-47 pinoid-binding protein 1 (.1) Potri.019G120600 [exp] 154 / 6e-50 AT5G54490 147 / 6e-47 pinoid-binding protein 1 (.1) Potri.011G129100 [exp] 143 / 2e-45 AT4G27280 124 / 5e-38 Calcium-binding EF-hand family protein (.1) Potri.001G412077 [exp] 138 / 2e-43 AT4G27280 117 / 4e-35 Calcium-binding EF-hand family protein (.1) Potri.011G039500 [exp] 137 / 4e-43 AT4G27280 127 / 6e-39 Calcium-binding EF-hand family protein (.1) Potri.011G039600 [exp] 137 / 4e-43 AT4G27280 127 / 6e-39 Calcium-binding EF-hand family protein (.1) Potri.004G027200 [exp] 133 / 2e-41 AT5G54490 127 / 3e-39 pinoid-binding protein 1 (.1) Potri.014G101700 [exp] 132 / 7e-41 AT2G46600 181 / 3e-60 Calcium-binding EF-hand family protein (.1) Potri.002G174900 [exp] 128 / 4e-39 AT2G46600 174 / 4e-57 Calcium-binding EF-hand family protein (.1) Potri.011G125300 [exp] 126 / 1e-38 AT5G54490 122 / 5e-37 pinoid-binding protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031588 pacid=23156011 polypeptide=Lus10031588 locus=Lus10031588.g ID=Lus10031588.BGIv1.0 annot-version=v1.0 ATGACGGCGGCAAAGCTCGGCGATTTCGAAGATCTGCTCCCGGTGATGGCGGATAAACTAGGCGGGGAAGGACTAATCAGGGAGCTCTGCAATGGGTTCC AGCTGTTGGTCGATAAGGACAGAGGGGTCATAACCCCGGCGAGCTTGCGCCTCAACGCCGCCGTGCTGGGCTTGCAGGACTTGTCGGAAGGGGAGATCGC CGGGATGGTTAGAGAAGGGGATCTTGACGGCGATGGAGCTCTTGATCAGATGGAGTTTTGTGTTCTGATGTTTCGGTTGAGCCCTGATTTGATGAACGGA GCTAAGGATTGGCTTGAAGAAGCGTTGGAAGATGAGTTTAGAGACGTCGCCGCCGGATTTTGA
AA sequence Show only first row Show all	>Lus10031588 pacid=23156011 polypeptide=Lus10031588 locus=Lus10031588.g ID=Lus10031588.BGIv1.0 annot-version=v1.0 MTAAKLGDFEDLLPVMADKLGGEGLIRELCNGFQLLVDKDRGVITPASLRLNAAVLGLQDLSEGEIAGMVREGDLDGDGALDQMEFCVLMFRLSPDLMNG AKDWLEEALEDEFRDVAAGF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27280			Calcium-binding EF-hand family...		Lus10031588 [exp]	0	1
AT3G57120			Protein kinase superfamily pro...		Lus10027054 [exp]	1.7	0.9439
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10010055 [exp]	2.0	0.9447
AT3G07200			RING/U-box superfamily protein...		Lus10022569 [exp]	2.0	0.9427
AT3G13130			unknown protein		Lus10012341 [exp]	2.2	0.9388
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Lus10028970 [exp]	3.5	0.9451
AT1G75860			unknown protein		Lus10034539 [exp]	3.5	0.9223
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10010238 [exp]	5.9	0.9349
AT3G20600		NDR1	non race-specific disease resi...		Lus10011162 [exp]	6.0	0.9372
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Lus10007493 [exp]	7.9	0.9284
					Lus10018552 [exp]	8.0	0.9105

Compare expression of checked genes

Lus10031588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.