Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23960 319 / 1e-101 ATTPS21 terpene synthase 21 (.1.2) AT3G14520 264 / 4e-80 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G31950 260 / 1e-78 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 260 / 2e-78 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14540 257 / 2e-77 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 252 / 1e-75 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G33750 250 / 6e-75 AtTPS22 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14490 249 / 2e-74 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G32030 236 / 1e-69 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G16730 230 / 6e-68 AtTPS02 terpene synthase 02 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031590 [exp] 827 / 0 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2) Lus10040043 [exp] 391 / 3e-129 AT5G23960 329 / 7e-106 terpene synthase 21 (.1.2) Lus10002660 [exp] 355 / 1e-115 AT3G14520 310 / 4e-98 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10042204 [exp] 347 / 2e-112 AT5G23960 347 / 4e-113 terpene synthase 21 (.1.2) Lus10008611 [exp] 342 / 3e-110 AT5G23960 348 / 4e-113 terpene synthase 21 (.1.2) Lus10014724 [exp] 331 / 3e-106 AT5G23960 314 / 2e-100 terpene synthase 21 (.1.2) Lus10008614 [exp] 325 / 4e-104 AT5G23960 345 / 1e-112 terpene synthase 21 (.1.2) Lus10042202 [exp] 324 / 1e-103 AT5G23960 302 / 8e-96 terpene synthase 21 (.1.2) Lus10006356 [exp] 237 / 1e-69 AT3G25820 371 / 3e-121 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095500 [exp] 422 / 2e-141 AT5G23960 408 / 6e-137 terpene synthase 21 (.1.2) Potri.011G142800 [exp] 407 / 2e-135 AT5G23960 405 / 2e-135 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 404 / 2e-134 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.015G085500 [exp] 392 / 1e-129 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.007G074466 [exp] 344 / 3e-111 AT5G23960 443 / 1e-150 terpene synthase 21 (.1.2) Potri.007G074400 [exp] 335 / 5e-108 AT5G23960 441 / 6e-150 terpene synthase 21 (.1.2) Potri.019G045100 [exp] 320 / 5e-102 AT5G23960 474 / 2e-162 terpene synthase 21 (.1.2) Potri.019G020367 [exp] 318 / 2e-101 AT5G23960 494 / 7e-171 terpene synthase 21 (.1.2) Potri.019G016500 [exp] 317 / 6e-101 AT5G23960 463 / 6e-159 terpene synthase 21 (.1.2) Potri.019G023004 [exp] 316 / 2e-100 AT5G23960 474 / 8e-163 terpene synthase 21 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10031589 pacid=23155939 polypeptide=Lus10031589 locus=Lus10031589.g ID=Lus10031589.BGIv1.0 annot-version=v1.0 ATGGCGGCGTCGATGGCGGTTGATCGCAAACCAATTCTCGAGTTGGGAAGAAGGAGGATCGAGTTTCATCCTTCCGTCTGGAACGATTTCTTCCTTCGTC AACCCAATGCTACGTCCGACCATCATCTTCAGGTGAAGATGAGTGGGTGGAAAAAGGAAGCTGAGGAACTGACGGAGAAAGTCAGGGTTATGCTCAAAGG AGCCAAGACGACTTTAGAAAAGTTGGATATGATTGACGCCGTCCAAAGGCTCGGCATCGGTTACCGTTTCGAACCCGAAATCGAAGCAGCTCTGCTCTCC ATCTCCACCGCCGTTGACGTCGGCGGCGACGCCGTCCCTCCTCTCCCCCCGTACCCATGCCTGCCCCCCGGCCCCCCTCCTCCCCCCCCCCCCCCGCCGT TGACGTCGGCGGCGACGAGGACTTGTACGGTGCTTCCCTCCGATTCCGGCTCCTCAGGCACCAAGGCTATCCTGTTAATCCGGCCGATATGGACGTTTGA GATTAAACTTAATTTGACATTATTGAAAGTATTTGGTAAGTTCAAAGATGAGAAGGGAAACTTCAAAGAAGAAGTGGGGAACAATGTGAAGGGGCTGCTA AGCTTATACGAAGCAGCTTACTACAGCGTGAACGGAGAAGAGTTACTCACCGAAGCTCTCGAGTTTGCGAGGGCCAAGCTCGAACCCATTGCCGAATCAG CCGATTCGCCATGGGCTAGCCAACTGAAGCACTCTCTGAAGTGGCCTATACTGAAAGGGCTACCCATAAGAGAGTCGAGGCATTTCATGTCGATTTACGA AAAAACTGATGGCCACAATGAAGCTATATTGAAGCTAGGGAAACTGGATTTCAACTTGGTCCAGAAGTTGCATCAACATGAGCTTAAGATTCTCACCCAG TGGTGGATCGATCTGGAGACGGAGAAAACGATGCCGTTTGCAAGGGACAGGATGATAGAGTGCTACTTGTGGCCATTGGGAGGATTCCTGAAGCCAGAAG AGTACACCACTGGCAGAATCTTAGTCACCAAAATCACTGCACTCGTCTCTGTGGTCGACGACATTTTCGATGTCCATGGCACCATCGACGAGCTCGAGCT CTTCGCCCAAGTTATTGACAGGTGGGAAATTACCGATGAGGACAAGGTGCCAAGCTATGTGAAACACTGGTTCAAGGCATTGCTTGATGTGTTTGCTGAA ATTGAAGCTCAAGTTTCCCTGGAAGGAAGGTCTAATTTCTGTATGGACTATGCAAAACTGATAGTGCAGCAAACAGTGACGGCATTCCTACAGGAGGCGA GATGGTACAACAACAACAACTATGTGGCAACGGTGGAAGAACATCTCCACAATGGCTACATGAGCATTGGTTATCCAATAGCCATTGTTGTCATCTACTG TATGGTTGGAGAAGTTGCTTCCAAGGAGGCGTTCGAGTGGCTATTCAGCCCGTCCAAGATCCTCGTCTCAGGCTCGACCATCGCCAGGCTCATGGATGAC ATCGTCTCTCATGAGTTCGAGCAGGAGAGAGGGCACGTGGCATCGACGGTGGAATGCTACATGAAGCAGTACGGCACTTCGAAGGAAGAGGCGCACTCGG AGCTGAAGAAGATGATGGAGAAACTGTGGAAAGACATGATAGAAGATCTGCTGGAGAAGAAGGTTTCACTGCATGCTCTGTTGATAATACTCAACATGGT TCGAGTCATGGACTTGCTGTACAAGGACGAAGACACCTACACCCACTCTGAGACCGTCATGAAGGAGCTCATCACCAGCATCTTGGTGGATCCAGTCCCT GTATGA
AA sequence Show only first row Show all	>Lus10031589 pacid=23155939 polypeptide=Lus10031589 locus=Lus10031589.g ID=Lus10031589.BGIv1.0 annot-version=v1.0 MAASMAVDRKPILELGRRRIEFHPSVWNDFFLRQPNATSDHHLQVKMSGWKKEAEELTEKVRVMLKGAKTTLEKLDMIDAVQRLGIGYRFEPEIEAALLS ISTAVDVGGDAVPPLPPYPCLPPGPPPPPPPPPLTSAATRTCTVLPSDSGSSGTKAILLIRPIWTFEIKLNLTLLKVFGKFKDEKGNFKEEVGNNVKGLL SLYEAAYYSVNGEELLTEALEFARAKLEPIAESADSPWASQLKHSLKWPILKGLPIRESRHFMSIYEKTDGHNEAILKLGKLDFNLVQKLHQHELKILTQ WWIDLETEKTMPFARDRMIECYLWPLGGFLKPEEYTTGRILVTKITALVSVVDDIFDVHGTIDELELFAQVIDRWEITDEDKVPSYVKHWFKALLDVFAE IEAQVSLEGRSNFCMDYAKLIVQQTVTAFLQEARWYNNNNYVATVEEHLHNGYMSIGYPIAIVVIYCMVGEVASKEAFEWLFSPSKILVSGSTIARLMDD IVSHEFEQERGHVASTVECYMKQYGTSKEEAHSELKKMMEKLWKDMIEDLLEKKVSLHALLIILNMVRVMDLLYKDEDTYTHSETVMKELITSILVDPVP V

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10031589 [exp]	0	1
					Lus10010116 [exp]	1.0	0.8964
AT3G21120			F-box and associated interacti...		Lus10040800 [exp]	6.3	0.6874
AT5G03795			Exostosin family protein (.1)		Lus10013790 [exp]	8.7	0.7293
AT5G13825			unknown protein		Lus10001690 [exp]	10.3	0.7448
AT1G34630			unknown protein		Lus10043395 [exp]	11.7	0.6936
					Lus10034050 [exp]	16.6	0.5760
					Lus10003840 [exp]	29.0	0.6796
					Lus10022573 [exp]	31.0	0.6796
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001431 [exp]	32.9	0.6796
					Lus10006661 [exp]	34.6	0.6796

Compare expression of checked genes

Lus10031589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.