Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23960 378 / 3e-125 ATTPS21 terpene synthase 21 (.1.2) AT3G14490 335 / 5e-108 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14540 323 / 2e-103 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 320 / 5e-102 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14520 317 / 8e-101 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G31950 304 / 6e-96 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G33750 298 / 8e-94 AtTPS22 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 297 / 4e-93 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT5G44630 295 / 6e-93 AtTPS11 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G32030 296 / 9e-93 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031589 [exp] 826 / 0 AT5G23960 318 / 3e-101 terpene synthase 21 (.1.2) Lus10040043 [exp] 467 / 1e-159 AT5G23960 329 / 7e-106 terpene synthase 21 (.1.2) Lus10008611 [exp] 446 / 3e-151 AT5G23960 348 / 4e-113 terpene synthase 21 (.1.2) Lus10042204 [exp] 437 / 4e-148 AT5G23960 347 / 4e-113 terpene synthase 21 (.1.2) Lus10002660 [exp] 434 / 1e-146 AT3G14520 310 / 4e-98 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10014724 [exp] 415 / 3e-139 AT5G23960 314 / 2e-100 terpene synthase 21 (.1.2) Lus10008614 [exp] 399 / 2e-133 AT5G23960 345 / 1e-112 terpene synthase 21 (.1.2) Lus10042202 [exp] 388 / 7e-129 AT5G23960 302 / 8e-96 terpene synthase 21 (.1.2) Lus10033643 [exp] 306 / 4e-96 AT4G16730 356 / 2e-115 terpene synthase 02 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095500 [exp] 538 / 0 AT5G23960 408 / 6e-137 terpene synthase 21 (.1.2) Potri.011G142800 [exp] 523 / 0 AT5G23960 405 / 2e-135 terpene synthase 21 (.1.2) Potri.015G085500 [exp] 502 / 1e-173 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 488 / 3e-168 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.019G020367 [exp] 405 / 1e-135 AT5G23960 494 / 7e-171 terpene synthase 21 (.1.2) Potri.019G045100 [exp] 404 / 3e-135 AT5G23960 474 / 2e-162 terpene synthase 21 (.1.2) Potri.019G016900 [exp] 397 / 1e-132 AT5G23960 474 / 6e-163 terpene synthase 21 (.1.2) Potri.019G016700 [exp] 395 / 5e-132 AT5G23960 482 / 6e-166 terpene synthase 21 (.1.2) Potri.007G074466 [exp] 395 / 1e-131 AT5G23960 443 / 1e-150 terpene synthase 21 (.1.2) Potri.019G023004 [exp] 394 / 4e-131 AT5G23960 474 / 8e-163 terpene synthase 21 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10031590 pacid=23155859 polypeptide=Lus10031590 locus=Lus10031590.g ID=Lus10031590.BGIv1.0 annot-version=v1.0 ATGGCGGCTGTTGCTGAACCAGTTATGGAGTCGGGAAGAAGGAGGGTTGAGTTCCACCCTTCGGTTTGGAACGATTTCTTCGCTCGACCCGATAGTACTT CCGACCTTCATCCTCAGATGATCACGAGTGGGTGGGAAGAGGAAGCTAAGCAACTGACGGAGCAAGTCAGGGGTATGCTTAAAGGAGCAAAGACTAGTTT GGAAAGGATGGAGATGATAGACGCCGTCCAAAGGCTCGGCCTCGGTTACCGTTTCGAGCTCGAAATTGAAGAAGCTCTGCTTAACATGTCTAACGCCGGT GATGGCGATGAGGACTTGTACTTTGCTTCTCTCCGATTCCGGCTTCTCAGGCAACAAGGGTATCATGTTAATCCCGCCGTATTCGAGAAGTTCAAAGACG AGAAGGGAAACTTCAAAGAAAAAGCCGGGAACGACGTGAAGGGGCTGCTAAGCTTATACGAAGCTGCTTACTACAGAGTGAACGGAGAAGACTTACTCGA CCAAGCTCTCGAGTTTGCTAGGGCCAAACTCGAGCCCATAGCCGAATCGGCCGATTCGACATGGGCCAGCCAAGTGAAGCACTCTCTGAAGTGGCCTATA TTGAAAGGGCTGCCGATAAGAGAGTCGAGGCATTTCATGTCGATTTACGAAAAAACTGATGGCCACAATGAAGCTATCTTGAAGCTAGGGAAGCTGGATT TCAACTTGGTCCAGAAGTTGCATCAACACGAGCTTAAGATCCTCACCCAGTGGTGGATGGATTTGGAGACGGAGAAAACGCTGCCGTTTGCAAGGGACAG AGTGATAGAGTGCTACATGTGGCCACTGGGAGGATTCATTAAGCCAGAGTACAGCAATGGGAGAATCTTCGTCACCAAAATCACTGCACTCGTCTCTGTA CTCGACGACATTTTCGATGTCCATGGCACCATCACCGAGCTCGAGCTAGTCGCCCAAGTTATCGAGAGGTGGGATATTACCGATGACGACAAAGTGCCAA TCTATGTCAACCACTGGTTCAAAGCATTGCTTGATGTGTTTGCTGAGATTGAAGCACATGTTTCCATGGAAGGAAGGTCTTTCTGTATGGACTATGCAAA AGAAGGGGTCAAGCAAATAGTGAGATCCTTCCTAAAGGAGGCAAGATGGTACAACAAAGGCTATGTGGCAACTGTTGAAGAGCATCTTCAAAATGGCTAC ATGAGCATAGGTTATCCCTTGGCCATCACGGTTGTCTACTGTGGGATGGGAGAAGTTGCTTCCAAGGAGGTGTTTGAGTGGCTGTTCAGCCAGCCCAAGA TCGTCGTGGCCGGCTCCACCATCGCCAGGCTCATGGATGACATCGTCTCCCACGAGTTCGAGCAGGAAAGAGGACACGTAGCTTCAACAGTGGAATGTTA CATGAAGCAACATGGCGTTTCCAAGGAAGAGGCACACTTGGAACTGAACAAGATGGTGGAGGAACTCTGGAAGGACATGAATGAAGAGATGTTATTGCAA CCGCCATTGAAGGAAGCTCCGATGCCTGCTCTGTTGACGGTACTCAACAAGGTTCGAGTGATGGACTTGCTGTACAAGGACGAGGACACCTACACGAACT CTAAGACCGTCATGAAAGAGCTTCTTACCAATCTTTTGGTGGATCCTGTCCCTATATAA
AA sequence Show only first row Show all	>Lus10031590 pacid=23155859 polypeptide=Lus10031590 locus=Lus10031590.g ID=Lus10031590.BGIv1.0 annot-version=v1.0 MAAVAEPVMESGRRRVEFHPSVWNDFFARPDSTSDLHPQMITSGWEEEAKQLTEQVRGMLKGAKTSLERMEMIDAVQRLGLGYRFELEIEEALLNMSNAG DGDEDLYFASLRFRLLRQQGYHVNPAVFEKFKDEKGNFKEKAGNDVKGLLSLYEAAYYRVNGEDLLDQALEFARAKLEPIAESADSTWASQVKHSLKWPI LKGLPIRESRHFMSIYEKTDGHNEAILKLGKLDFNLVQKLHQHELKILTQWWMDLETEKTLPFARDRVIECYMWPLGGFIKPEYSNGRIFVTKITALVSV LDDIFDVHGTITELELVAQVIERWDITDDDKVPIYVNHWFKALLDVFAEIEAHVSMEGRSFCMDYAKEGVKQIVRSFLKEARWYNKGYVATVEEHLQNGY MSIGYPLAITVVYCGMGEVASKEVFEWLFSQPKIVVAGSTIARLMDDIVSHEFEQERGHVASTVECYMKQHGVSKEEAHLELNKMVEELWKDMNEEMLLQ PPLKEAPMPALLTVLNKVRVMDLLYKDEDTYTNSKTVMKELLTNLLVDPVPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10031590 [exp]	0	1
					Lus10001992 [exp]	1.0	0.8156
AT4G18260			Cytochrome b561/ferric reducta...		Lus10020757 [exp]	11.0	0.7657
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10040457 [exp]	13.0	0.7905
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10030404 [exp]	14.6	0.7997
AT2G24800			Peroxidase superfamily protein...		Lus10020097 [exp]	15.3	0.8152
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10014850 [exp]	16.3	0.8010
AT1G72200			RING/U-box superfamily protein...		Lus10036466 [exp]	22.2	0.7586
					Lus10033439 [exp]	23.6	0.7694
AT1G19400			Erythronate-4-phosphate dehydr...		Lus10042323 [exp]	24.1	0.7899
AT2G44525			Protein of unknown function (D...		Lus10007558 [exp]	24.2	0.6542

Compare expression of checked genes

Lus10031590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.