Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03230 852 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 410 / 8e-129 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 399 / 1e-124 S-locus lectin protein kinase family protein (.1.2) AT4G21380 399 / 1e-124 ARK3 receptor kinase 3 (.1) AT1G65800 398 / 3e-124 ARK2 receptor kinase 2 (.1) AT4G27290 394 / 4e-123 S-locus lectin protein kinase family protein (.1) AT4G27300 394 / 9e-123 S-locus lectin protein kinase family protein (.1) AT1G65790 394 / 2e-122 ARK1 receptor kinase 1 (.1) AT4G23180 384 / 5e-121 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT1G11340 386 / 3e-119 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018512 [exp] 1101 / 0 AT4G03230 823 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 681 / 0 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10031592 [exp] 665 / 0 AT4G03230 351 / 3e-107 S-locus lectin protein kinase family protein (.1) Lus10039725 [exp] 538 / 8e-180 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 416 / 6e-131 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 410 / 1e-127 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024064 [exp] 402 / 3e-125 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 397 / 1e-123 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10006745 [exp] 392 / 1e-123 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G120000 [exp] 897 / 0 AT4G03230 967 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119700 [exp] 888 / 0 AT4G03230 1025 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119900 [exp] 871 / 0 AT4G03230 974 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119600 [exp] 860 / 0 AT4G03230 983 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G150800 [exp] 860 / 0 AT4G03230 1206 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 420 / 1e-132 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125601 [exp] 416 / 3e-131 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 412 / 2e-129 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014802 [exp] 400 / 3e-129 AT1G11330 454 / 5e-152 S-locus lectin protein kinase family protein (.1.2) Potri.011G125000 [exp] 410 / 4e-129 AT4G27290 790 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10031591 pacid=23155960 polypeptide=Lus10031591 locus=Lus10031591.g ID=Lus10031591.BGIv1.0 annot-version=v1.0 ATGGAGTCCCAAATCACCACATTGTTCTTCCTCGTAGCAGCAGTATTATCACTCTCCCCTGTTATTTCAGTAACCGACTCTGTAACCTTCAACGCCACCT CTGACGCCCCCGTGGTACTCCTCAAAGACAGCAATGGAGAAACTCTGGTCTCCAAAGACGGAACTTTCGAGCTGGGTTTCTTCTCACCAAACGGAAGCGA CCGGAGATACCTCGGAATATGGTACCGGAACTGGTCGTCGACGGTTGTCTGGGTCGCGAATCGGAAAGACGGACTTCTAGAAAAAACAGGGTACCTCTGT TTTACTGCTGTTGACAGAAACCTCCAAATCTTGGACGGAATCCGTCACTCATACTGGTCCGCTGAACTCGAACCGCTGGAAAGATCTTCTGGTTACAACC TGAGGCTTTCCGAGTCTGGTAATTTGATCCTGACACGGGGAGAAGAAGAGAGCATTATTCTCTGGCAGAGCTTCGATCATCCAACTGACACGTTTCTATC AGGGATGAGGATGGTTCCAGGTTTGAATCTAACTTCCTGGACTAGCCCCGACGATCCCTCGCCTGGAAATTATGTGTTCGAGCTCGATGAGAATCTGAAG CAGTTCGTAATTCTGAACTATTCCAAACCTTTTTGGAATTCTTTTGATCAAATTCCTGTGTACCTCCCTAAATTCCTCATGAATGAGTCAACCTCGAATT CGTCCTTCATGAAATTACCAATTCCAAAGAGAGGGGATTCCATGTCCAGGATTCTGATGGGTTTTGACAGCAGGATCCAGTTCTACTCTAGCCCTGACGA AGCAGAGCCGTTCTGGTATGCGCCTTCCGACATTTGCGACCTACAGTGGGCATGTGGGAGCTTCGCAAGCTGCAACAGAGAACACCGCCTTCCGTGCAAG TGTCTTCCAGGGTTCGTCCCGAAAACACCCGAGAATTGGGATTCAGGGGACTTCTCCGAAGGGTGTACGAGGAATTCCCAGGATTGTAGGAAGAAGTCTA CCGCGTTCCTCGACGTCAAGGAAGGAAGGGTGGAGAAGGAGACCGGAAAGTTACCGGTCGATGAAGACAAATGCAGAAATTGGTGCCTGGATAACTGTAA TTGCCAGGCGTATTCATTTTATATCAATAGGGGTGGATGCAAATATTGGTTCAGCGATGTCAAAGACATCGACGAGACTGCGGGTGTTTCTGGGGAACTC AAAAGTCTCATGGTCCGAGTCCAGAATTCAGATATAGAATCGACGAAAAAGGATTGTAAACCATGCGGGACCAACACCATTCCTTACCCGTTGAGCACCG GACCAGACTGTGGCGATGTGATGTACTCGAGCTTCATCTGTCATGCTGACAGCGGACGACTTTTCTTCACATTACCGCTCAACAACAGATACAAAGTGAC TAGAATCGACAAACGTTCACGGAAGTTCTTCATTCAAGCCGGGCAAGAAAACTGTGAAAATAAGGCTATTGGACTAAATCTGTCGTTACCGTTTAAGGTT CATGACGATCGGTGTAATGACGATATGGGTGATGTAAGTTTTGGACCGTTCCACGATGGGAAATCGTTCTATGAAATGGCAATTGTGTGGGATTCACCAT CAGAGCCACTCTGTAGCTCCGACGGCGACTGCTACATCTGGCCAGATTCCAGTTGCCGGCGTAAGGGCAGAGAGAAAAGGTGTCTTTGCGATGGGAATTC GAGATGGGATGGCATCAATGCTAATTGCACCCCGATATCACCAGAGGAAACAAGATGGCCGTTACTCTATCCTATCATCTTCGGGTGTATTGGAGGAGTT CTTCTGATAACTGGTTTTGCTTTGGTTATACTATACGTGCGGAAAAAGACAAAATCGGTCGGTAAAAAAGGAAGAAACTTTGAAGAGAATTTAGCATTGA GGATGTACGATAGTGAGAAGCGGGTGAAAGAGTTCATAAACTCTGGACATGAGTTTGGTGAAGATGATAAGAAGGACATCAACGTCCCATTCTTTGATTT GGACTGCATTTTAGCTGCCACTGACTTCTTCTCCGTTGACAACAAGCTCGGACAGGGTGGTTTCGGCCCCGTTTACAAGGGCAAGTTTCCAGGAGGCCAG GAGATTGCAGTGAAGAGGCTGTCGAGCGCTTCGGCGCAAGGGTTAGAAGAGTTCAAAAACGAGGTCGTTTTGATTGCGAAGCTACAACACAAGAATCTCG TCAGGCTGTTAGGATACTGTGTCGAAGGGAATGAGAAGATGCTGCTCTACGAATACATGCCTAACAAGAGCCTCGACTTCTTCATCTTTGACCGAAACCG GTGCGTGTTACTGGATTGGAAGATGAGGTTCAACATTATAATGGGGATTGCTCGAGGACTGCTTTACCTCCATCATGATTCGAGGCTGACAATCATTCAT AGAGACATGAAAACCAGCAACATCCTTCTCGACGAGGTAATGAACCCTCGGATTTCGGACTTTGGCATGGCGAGGATAATGGGAGGGCAGGAAACAGAGG CCAACACTGTCAAAGTAGTTGGAACTTACGGCTACATGTCTCCAGAGTATGCGCTGGACGGGAACTTCTCAATAAAATCCGACGTATTCAGCTTCGGAGT GGTCCTACTCGAGATCATCAGCGGGAAGAGGAACACCGGATTCTACAAGTCGAACAAAGTGGTGTCCCTTCTTGGTCACGTATGGGGGCACTGGAGAGAA GAGAAGGCGACGGAAGTGATGGATCAATCTTTGTCCGAAACATGTGTGGTGAACGAGTTCCTGAGGTGTGTAAACGTCGCACTGCTGTGCGTCCAGGAAG ATCCTAACGATCGGCCGACGATGGAAAATGTTCTTTTCATGTTAGGGAGTGAAGCAGCTAGCCTTGGCCGTCCGAAAGAGCCTGCATTCACTATCAGACG GGAAATTTCGAGTTCTACTTCGAGTAGTATAGTGGCGATGGAGACTACTGTGGTGGAAGCAAGATGA
AA sequence Show only first row Show all	>Lus10031591 pacid=23155960 polypeptide=Lus10031591 locus=Lus10031591.g ID=Lus10031591.BGIv1.0 annot-version=v1.0 MESQITTLFFLVAAVLSLSPVISVTDSVTFNATSDAPVVLLKDSNGETLVSKDGTFELGFFSPNGSDRRYLGIWYRNWSSTVVWVANRKDGLLEKTGYLC FTAVDRNLQILDGIRHSYWSAELEPLERSSGYNLRLSESGNLILTRGEEESIILWQSFDHPTDTFLSGMRMVPGLNLTSWTSPDDPSPGNYVFELDENLK QFVILNYSKPFWNSFDQIPVYLPKFLMNESTSNSSFMKLPIPKRGDSMSRILMGFDSRIQFYSSPDEAEPFWYAPSDICDLQWACGSFASCNREHRLPCK CLPGFVPKTPENWDSGDFSEGCTRNSQDCRKKSTAFLDVKEGRVEKETGKLPVDEDKCRNWCLDNCNCQAYSFYINRGGCKYWFSDVKDIDETAGVSGEL KSLMVRVQNSDIESTKKDCKPCGTNTIPYPLSTGPDCGDVMYSSFICHADSGRLFFTLPLNNRYKVTRIDKRSRKFFIQAGQENCENKAIGLNLSLPFKV HDDRCNDDMGDVSFGPFHDGKSFYEMAIVWDSPSEPLCSSDGDCYIWPDSSCRRKGREKRCLCDGNSRWDGINANCTPISPEETRWPLLYPIIFGCIGGV LLITGFALVILYVRKKTKSVGKKGRNFEENLALRMYDSEKRVKEFINSGHEFGEDDKKDINVPFFDLDCILAATDFFSVDNKLGQGGFGPVYKGKFPGGQ EIAVKRLSSASAQGLEEFKNEVVLIAKLQHKNLVRLLGYCVEGNEKMLLYEYMPNKSLDFFIFDRNRCVLLDWKMRFNIIMGIARGLLYLHHDSRLTIIH RDMKTSNILLDEVMNPRISDFGMARIMGGQETEANTVKVVGTYGYMSPEYALDGNFSIKSDVFSFGVVLLEIISGKRNTGFYKSNKVVSLLGHVWGHWRE EKATEVMDQSLSETCVVNEFLRCVNVALLCVQEDPNDRPTMENVLFMLGSEAASLGRPKEPAFTIRREISSSTSSSIVAMETTVVEAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03230			S-locus lectin protein kinase ...		Lus10031591 [exp]	0	1
					Lus10026102 [exp]	1.4	0.9133
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10007633 [exp]	3.0	0.8734
AT3G08870			Concanavalin A-like lectin pro...		Lus10012509 [exp]	3.5	0.8495
AT5G01550		LECRKA4.2	lectin receptor kinase a4.1 (....		Lus10022662 [exp]	3.7	0.8813
AT5G36930			Disease resistance protein (TI...		Lus10029860 [exp]	5.5	0.8503
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10042239 [exp]	7.7	0.8395
AT1G64380	AP2_ERF		Integrase-type DNA-binding sup...		Lus10001898 [exp]	7.9	0.8485
AT4G27290			S-locus lectin protein kinase ...		Lus10037731 [exp]	11.0	0.8456
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028616 [exp]	13.1	0.8618
AT3G53810			Concanavalin A-like lectin pro...		Lus10008597 [exp]	14.5	0.7997

Compare expression of checked genes

Lus10031591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.