Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03230 327 / 4e-98 S-locus lectin protein kinase family protein (.1) AT2G19130 189 / 5e-50 S-locus lectin protein kinase family protein (.1) AT1G11330 182 / 1e-47 S-locus lectin protein kinase family protein (.1.2) AT1G11350 175 / 2e-45 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT4G27290 171 / 4e-44 S-locus lectin protein kinase family protein (.1) AT1G11300 167 / 1e-42 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G61370 165 / 3e-42 S-locus lectin protein kinase family protein (.1) AT4G21390 163 / 1e-41 B120 S-locus lectin protein kinase family protein (.1) AT1G61390 162 / 4e-41 S-locus lectin protein kinase family protein (.1.2) AT1G11280 162 / 4e-41 S-locus lectin protein kinase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031591 [exp] 618 / 0 AT4G03230 853 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018512 [exp] 490 / 1e-159 AT4G03230 823 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014810 [exp] 207 / 1e-56 AT4G27290 692 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007631 [exp] 201 / 1e-55 AT4G23180 257 / 1e-76 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10033752 [exp] 189 / 1e-53 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10038411 [exp] 172 / 5e-48 AT1G11330 308 / 1e-98 S-locus lectin protein kinase family protein (.1.2) Lus10015096 [exp] 177 / 3e-47 AT4G05200 234 / 7e-69 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10033742 [exp] 168 / 9e-45 AT4G03230 161 / 2e-42 S-locus lectin protein kinase family protein (.1) Lus10039725 [exp] 171 / 1e-44 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G120000 [exp] 346 / 5e-105 AT4G03230 967 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G150800 [exp] 338 / 3e-102 AT4G03230 1206 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119700 [exp] 330 / 3e-99 AT4G03230 1025 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119600 [exp] 325 / 4e-97 AT4G03230 983 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119900 [exp] 308 / 3e-91 AT4G03230 974 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027300 [exp] 192 / 3e-51 AT1G11330 810 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.001G409300 [exp] 187 / 1e-49 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 184 / 1e-48 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G039000 [exp] 182 / 6e-48 AT1G11330 797 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G037600 [exp] 182 / 1e-47 AT4G21390 899 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10031592 pacid=23156038 polypeptide=Lus10031592 locus=Lus10031592.g ID=Lus10031592.BGIv1.0 annot-version=v1.0 ATGGATTCCAGAGTGATGCCATTGTTCTTCCTCATAGTAGTAGTTCTATCAGTCTCCCCTGTTTTTTCAAACTTTACTGTACGAATCTATCAATCACGTT CTGACACCGACACGGCACTCCTCAACGACAGCAGAGGAGAAACTCTGGTCTCTAAGGACGGAACTTTCGAGCTGGGTTTCTTCTCACCAAACAGATCCAA CCGGAGATACCTCGGTGTATGGTACCGGAAGCGGTCGTCTACGGTTGTCTGGGTCGCGAATCGGGACCATGGACTGCAAGATAAAACAGGGTACCTCTGT TTAAATTTTCAAATAGGCCTCCAAATCCTGGACGGAAGCCGTAAAGCATACTGGTCGTCCTCAATTGAACTTGGACCCATGGAAAGATACGGCAGTCACA ACCTGATACTTTACGATTCTGGTAATTTGATCCTGACTGGGGTAGAAGAACAGAGCATTCTGTGGCAGAGCTTCGATCATCCAACCGACACGTTTCTAGC AGGGATGAAAATGGTTACAGGTTTGACTCTGACTTCCTGGACTAGCCCCCACGATCCCTCGCCTGGAAATTACCTGCTCCAGGTCGATCAGCAACCTTTG GATAATCAGCAGTTGGTAATTCTGAATAACTCCAAACCTTTTTGGAATTCTGGTGGTCAGATACCTCTGTTCATCTCTCAACTCCTCATGACTTCGCCAA CCAGCCGTCAAATGTATTGCCGCAGTTTACGCATTAGTGATCCGGCCTGCAACGCAGCGGCTCCCAATGCCAGATTTCTGATGGCTTTTGACGGCAGGAT TCAAGGTTTCCAGACGCAAAGCGAAATGACCCCATCGTGGGTCGAGCCTCAGGACATCTGCGACCTGACATCGGTGTGTGGGAGTTTTGGCAGCTGCAAC AGTGGGTACCATTGGCCATGTAAGTGTCTTCCAGGGTTTGAACCGAGATCAGAAGATAAGTGGAATGCAGGGGACTTCTCGGACGGGTGTACTAGTACGA GTAGTACAAACTTCCAGAATTGTGACAAGAACAGAAGTAGTATCTTCTTGAATCTGACCGTGGCAAAAGTGCGGAGGCCGCCTACACGAGTGAATCTGGA ACTGGTGAATGAACACAATTGCAGCGAATGGTGTCTAGGGCAATGCACCTGCCAGGCATATTCGTTCAGTAGCGGGTGCAACATTTGGACTGATGATGAC TTACAGGGCATCCAAGAGATTGATGGGCGTGTTGATGATGCGCCGGTTAGTCTCAACATTCGAGCTCATACTCCAAACACAGAAGAAGAAATGACTAAGA AGGATTGCAAACCATGCGGGATCAACACCATTCCTTACCCGCTGAGCATTGGACCAAACTGTGGCGATCCGATGTACTCGAGCTTCGTCTGTAATGCTAC CTCTGGACGACTTCTCTTCACATCACACAACATCAGATACACGGTGACTAGAATCGACAAACGTTCGCGGAAGTTCTTTGTTCAAGCCGGGAAAGAAAAT TGTGAAAAGAAGGCTATTGGACTAAATCAATCGTTGCCGTTTAAGGTTCATCATGATGTGTGTAATGACGATATGGGTAACATAAGTTTCGGACTTTTCC GCAATGCGAAATCATTCTATGAAATGGCGATTGTGTGGGATTTGCCATCTGAGCCACTCTGTGGCCCCAACGATGACTGTAGCAACTGGCCGAGTTCGAG TTGCCGGAGTAAGGGCGGAGGAAAGAAGTGTCTTTGCGATGGGAATTCAAGATGGGACGGCACTAACGCTAATTGTAGCCAGACTGCCACTGACTTCTTC TCCGTTGACAACAAGCTCGGACAGGGTGGTTTCGGCCCTGTTTACAAGGGCAAGTTTCCAGGAGGCCAGGAGATTGCAGTGAAGAGGCTGTCGAGCGCTT CGGCGCAAGGGTTAGAAGAGTTCAAAAACGAGGTCGTTTTGATTGCGAAGCTACAACACAAGAATCTCGTCAGGCTGTTAGGATACTGTGTCGAAGGGAA TGAGAAGATGCTGCTCTACGAATACATGCCTAACAAGAGCCTCGACTTCTTCATCTTTGAGTACGCCCTAGAGGGGAACTTCTCAATCAAATCCGACGTA TTCGGCTTCGGAGTGGTACTGCTCGAGATCATAAGCGGGCAAAGGAACACCGGGTTCTACAAGCCGGACAAAGTAGTGTCCCTTCTAGGTCACGTGTGGA AGTGCTGGAGAGAAGAGAAGGCGATGGATGTGATGGATCAATCATTGTCCGAAACATGCGTGGCGAACGAGTTCCTCACAGTTTCTAAACCGGAATTAAG TGCTTCGTTTCTTTTACATTACACCGTTTAA
AA sequence Show only first row Show all	>Lus10031592 pacid=23156038 polypeptide=Lus10031592 locus=Lus10031592.g ID=Lus10031592.BGIv1.0 annot-version=v1.0 MDSRVMPLFFLIVVVLSVSPVFSNFTVRIYQSRSDTDTALLNDSRGETLVSKDGTFELGFFSPNRSNRRYLGVWYRKRSSTVVWVANRDHGLQDKTGYLC LNFQIGLQILDGSRKAYWSSSIELGPMERYGSHNLILYDSGNLILTGVEEQSILWQSFDHPTDTFLAGMKMVTGLTLTSWTSPHDPSPGNYLLQVDQQPL DNQQLVILNNSKPFWNSGGQIPLFISQLLMTSPTSRQMYCRSLRISDPACNAAAPNARFLMAFDGRIQGFQTQSEMTPSWVEPQDICDLTSVCGSFGSCN SGYHWPCKCLPGFEPRSEDKWNAGDFSDGCTSTSSTNFQNCDKNRSSIFLNLTVAKVRRPPTRVNLELVNEHNCSEWCLGQCTCQAYSFSSGCNIWTDDD LQGIQEIDGRVDDAPVSLNIRAHTPNTEEEMTKKDCKPCGINTIPYPLSIGPNCGDPMYSSFVCNATSGRLLFTSHNIRYTVTRIDKRSRKFFVQAGKEN CEKKAIGLNQSLPFKVHHDVCNDDMGNISFGLFRNAKSFYEMAIVWDLPSEPLCGPNDDCSNWPSSSCRSKGGGKKCLCDGNSRWDGTNANCSQTATDFF SVDNKLGQGGFGPVYKGKFPGGQEIAVKRLSSASAQGLEEFKNEVVLIAKLQHKNLVRLLGYCVEGNEKMLLYEYMPNKSLDFFIFEYALEGNFSIKSDV FGFGVVLLEIISGQRNTGFYKPDKVVSLLGHVWKCWREEKAMDVMDQSLSETCVANEFLTVSKPELSASFLLHYTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03230			S-locus lectin protein kinase ...		Lus10031592 [exp]	0	1
					Lus10022598 [exp]	2.0	0.9209
AT5G49690			UDP-Glycosyltransferase superf...		Lus10008955 [exp]	2.4	0.9034
AT2G39450		ATMTP11	Cation efflux family protein (...		Lus10040318 [exp]	2.4	0.9169
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10017417 [exp]	4.1	0.8721
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10014427 [exp]	4.5	0.8892
AT3G50120			Plant protein of unknown funct...		Lus10009871 [exp]	5.7	0.8798
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10014407 [exp]	6.3	0.9009
AT1G68570			Major facilitator superfamily ...		Lus10034305 [exp]	6.5	0.8869
AT2G02240		MEE66	maternal effect embryo arrest ...		Lus10018171 [exp]	6.7	0.8750
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10014674 [exp]	7.5	0.8760

Compare expression of checked genes

Lus10031592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.